RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CYFIP1Q7L576 1253 aa11.35□□□□□ -0.59
SS18-221ENST00000582448 VSIG10LQ86VR7 867 aa11.35□□□□□ -0.59
SS18-221ENST00000582448 FUCA2Q9BTY2 467 aa11.35□□□□□ -0.59
SS18-221ENST00000582448 BECN2A8MW95 431 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 GCOM1H8Y6P7 765 aaPredicted RBP11.34□□□□□ -0.59
SS18-221ENST00000582448 LINC01565O15544 149 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 MBTPS2O43462 519 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 NCK2O43639 380 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 POLR2MP0CAP2 368 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 TGFB3P10600 412 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 GHRP10912 638 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 BMPR1AP36894 532 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 ZNF165P49910 485 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 POSTNQ15063 836 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 LONRF3Q496Y0 759 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 PRR23CQ6ZRP0 262 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 CCNJLQ8IV13 435 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 PDILTQ8N807 584 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 APBB2Q92870 758 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 DHX58Q96C10 678 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 TRIM44Q96DX7 344 aaPredicted RBP11.34□□□□□ -0.59
SS18-221ENST00000582448 ANO3Q9BYT9 981 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 KCNH6Q9H252 994 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 ALG13Q9NP73 1137 aaKnown RBP11.34□□□□□ -0.59
SS18-221ENST00000582448 DDX25Q9UHL0 483 aaKnown RBP11.34□□□□□ -0.59
SS18-221ENST00000582448 MYH7BA7E2Y1 1941 aa11.34□□□□□ -0.59
SS18-221ENST00000582448 ADAMTS3O15072 1205 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 CPNE3O75131 537 aaKnown RBP11.33□□□□□ -0.6
SS18-221ENST00000582448 RB1P06400 928 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 SLFN14P0C7P3 912 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 ESRRAP11474 423 aaPredicted RBP11.33□□□□□ -0.6
SS18-221ENST00000582448 IBSPP21815 317 aaPredicted RBP11.33□□□□□ -0.6
SS18-221ENST00000582448 ZNF76P36508 570 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 STAT6P42226 847 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 GRIA4P48058 902 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 NDUFV1P49821 464 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 C19orf57Q0VDD7 668 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 BTG3Q14201 252 aaPredicted RBP11.33□□□□□ -0.6
SS18-221ENST00000582448 SMAD2Q15796 467 aaKnown RBP11.33□□□□□ -0.6
SS18-221ENST00000582448 SPRED3Q2MJR0 410 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 RRAGBQ5VZM2 374 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 USP17L6PQ6QN14 398 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 MOXD1Q6UVY6 613 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 C4orf32Q8N8J7 132 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 SMARCE1Q969G3 411 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 CALML4Q96GE6 196 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 EPSTI1Q96J88 318 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 CDK5RAP3Q96JB5 506 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 C11orf84Q9BUA3 381 aaPredicted RBP11.33□□□□□ -0.6
SS18-221ENST00000582448 RBCK1Q9BYM8 510 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 PANK2Q9BZ23 570 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 CUEDC2Q9H467 287 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 LIN7BQ9HAP6 207 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 CD207Q9UJ71 328 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 TELO2Q9Y4R8 837 aa11.33□□□□□ -0.6
SS18-221ENST00000582448 SMTNL1A8MU46 457 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 ENPP3O14638 875 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 CHRNA1P02708 482 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 TXKP42681 527 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 GRIN1Q05586 938 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 NEDD9Q14511 834 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 GNPTABQ3T906 1256 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 KIAA0319Q5VV43 1072 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 SLFN12Q8IYM2 578 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 SAMD3Q8N6K7 520 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 TRIML1Q8N9V2 468 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 GPR20Q99678 358 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 LMAN2LQ9H0V9 348 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 DNAJC25Q9H1X3 360 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 MAGEF1Q9HAY2 307 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 NPHS2Q9NP85 383 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 MAP3K20Q9NYL2 800 aaKnown RBP11.32□□□□□ -0.6
SS18-221ENST00000582448 LRWD1Q9UFC0 647 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 ZNF215Q9UL58 517 aaPredicted RBP11.32□□□□□ -0.6
SS18-221ENST00000582448 KIAA1217Q5T5P2 1943 aa11.32□□□□□ -0.6
SS18-221ENST00000582448 MICAL3Q7RTP6 2002 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 MYO7AQ13402 2215 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 A0A096LPE4 126 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 A0A1W2PPZ6 126 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 C5orf67F2Z3F1 127 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 EIF1AYO14602 144 aaKnown RBP11.31□□□□□ -0.6
SS18-221ENST00000582448 MEIS2O14770 477 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 CAND2O75155 1236 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 TBX10O75333 385 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 TDP2O95551 362 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 MYL1P05976 194 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 MARK3P27448 753 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 SMAD4Q13485 552 aaKnown RBP11.31□□□□□ -0.6
SS18-221ENST00000582448 PNOCQ13519 176 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 PDIA5Q14554 519 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 COL19A1Q14993 1142 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 PAN2Q504Q3 1202 aaKnown RBP11.31□□□□□ -0.6
SS18-221ENST00000582448 HERC4Q5GLZ8 1057 aaPredicted RBP11.31□□□□□ -0.6
SS18-221ENST00000582448 KRT79Q5XKE5 535 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 METTL7BQ6UX53 244 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 RUFY4Q6ZNE9 571 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 RBM23Q86U06 439 aaKnown RBP11.31□□□□□ -0.6
SS18-221ENST00000582448 CABP7Q86V35 215 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 ARMC10Q8N2F6 343 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 PRSS33Q8NF86 280 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms