RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FPGT-TNNI3KV9GXZ4 949 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 AKAP10O43572 662 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 HAUS5O94927 633 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 NDUFA10O95299 355 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 CD1AP06126 327 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 CKBP12277 381 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 GCSHP23434 173 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 SMARCA1P28370 1054 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 ACVRL1P37023 503 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 RAB27AP51159 221 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 KHDC1Q4VXA5 237 aaKnown RBP8.23□□□□□ -1.09
SS18-214ENST00000580003 LY6G5CQ5SRR4 150 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 KCNV1Q6PIU1 500 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 LRRC55Q6ZSA7 311 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 CATIPQ7Z7H3 387 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 SLC16A11Q8NCK7 471 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 C3orf20Q8ND61 904 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 TBC1D15Q8TC07 691 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 MYEOVQ96EZ4 313 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 VRK1Q99986 396 aaPredicted RBP8.23□□□□□ -1.09
SS18-214ENST00000580003 KLHL11Q9NVR0 708 aa8.23□□□□□ -1.09
SS18-214ENST00000580003 CDHR4A6H8M9 788 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 CYR61O00622 381 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 ARIH2O95376 493 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 ABHD16AO95870 558 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 FOXR2Q6PJQ5 311 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 PRR18Q8N4B5 295 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 PROKR1Q8TCW9 393 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 JPH3Q8WXH2 748 aaPredicted RBP8.22□□□□□ -1.09
SS18-214ENST00000580003 DMRTA2Q96SC8 542 aa8.22□□□□□ -1.09
SS18-214ENST00000580003 PNMA8BQ9ULN7 279 aaPredicted RBP8.22□□□□□ -1.09
SS18-214ENST00000580003 SLC16A6O15403 523 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 MALP21145 153 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 PTPAQ15257 358 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 PGS1Q32NB8 556 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 BEAN1Q3B7T3 259 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 SPDYE7PQ495Y7 208 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 MRGPREQ86SM8 312 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 MAPKAPK5Q8IW41 473 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 ZFPM1Q8IX07 1006 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 AOPEPQ8N6M6 819 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 CPEB3Q8NE35 698 aaKnown RBP8.21□□□□□ -1.1
SS18-214ENST00000580003 IL17RDQ8NFM7 739 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 NUP133Q8WUM0 1156 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 NEU4Q8WWR8 484 aaPredicted RBP8.21□□□□□ -1.1
SS18-214ENST00000580003 RGMAQ96B86 450 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 RHOBTB2Q9BYZ6 727 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 GTPBP4Q9BZE4 634 aaKnown RBP8.21□□□□□ -1.1
SS18-214ENST00000580003 SCAND2PQ9GZW5 306 aaPredicted RBP8.21□□□□□ -1.1
SS18-214ENST00000580003 KMT5AQ9NQR1 393 aa8.21□□□□□ -1.1
SS18-214ENST00000580003 A0A1B0GTW7 788 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 OFD1O75665 1012 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 SBK3P0C264 359 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 DDX6P26196 483 aaKnown RBP eCLIP8.2□□□□□ -1.1
SS18-214ENST00000580003 ZFP36P26651 326 aaKnown RBP8.2□□□□□ -1.1
SS18-214ENST00000580003 CYP2C19P33261 490 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 BMPR1AP36894 532 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 IFIT1BQ5T764 474 aaKnown RBP8.2□□□□□ -1.1
SS18-214ENST00000580003 ARMC6Q6NXE6 501 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 SLC4A10Q6U841 1118 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 RHOUQ7L0Q8 258 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 MVB12AQ96EY5 273 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 CAMKK2Q96RR4 588 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 MAP3K14Q99558 947 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 ZSWIM1Q9BR11 485 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 GNL3LQ9NVN8 582 aaKnown RBP8.2□□□□□ -1.1
SS18-214ENST00000580003 ZIM2Q9NZV7 527 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 RNF181Q9P0P0 153 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 MAP3K2Q9Y2U5 619 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 NOX1Q9Y5S8 564 aa8.2□□□□□ -1.1
SS18-214ENST00000580003 LRRC14BA6NHZ5 514 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 TMEM200CA6NKL6 621 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 PRSS23O95084 383 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 FTLP02792 175 aaPredicted RBP8.19□□□□□ -1.1
SS18-214ENST00000580003 CFIP05156 583 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 FGFR4P22455 802 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 RESTQ13127 1097 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 SNAPC2Q13487 334 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 CCDC157Q569K6 752 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 UTP14CQ5TAP6 766 aaKnown RBP8.19□□□□□ -1.1
SS18-214ENST00000580003 MARS2Q96GW9 593 aaKnown RBP8.19□□□□□ -1.1
SS18-214ENST00000580003 PNKPQ96T60 521 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 RTFDC1Q9BY42 306 aaPredicted RBP8.19□□□□□ -1.1
SS18-214ENST00000580003 CDH19Q9H159 772 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 JKAMPQ9P055 326 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 PCDHA3Q9Y5H8 950 aa8.19□□□□□ -1.1
SS18-214ENST00000580003 AKAP8O43823 692 aaKnown RBP8.18□□□□□ -1.1
SS18-214ENST00000580003 SLC43A1O75387 559 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 AGFG2O95081 481 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 GPANK1O95872 356 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 SLC6A4P31645 630 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 NOMO3P69849 1222 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 HSD11B2P80365 405 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 GUCY1B3Q02153 619 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 OCA2Q04671 838 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 FHL2Q14192 279 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 NOMO2Q5JPE7 1267 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 TMEM132CQ8N3T6 1108 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 THRAP3Q9Y2W1 955 aaKnown RBP8.18□□□□□ -1.1
SS18-214ENST00000580003 MTO1Q9Y2Z2 717 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms