RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TRIM43Q96BQ3 446 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 LRRC46Q96FV0 321 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 ALPK1Q96QP1 1244 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SERINC2Q96SA4 455 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 GDF15Q99988 308 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 PDCD2LQ9BRP1 358 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 C1orf43Q9BWL3 253 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 STK31Q9BXU1 1019 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 MAGEB5Q9BZ81 275 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 OSBPL6Q9BZF3 934 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 DPH1Q9BZG8 443 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 ZNF518BQ9C0D4 1074 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 ADAM7Q9H2U9 754 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 JMJD4Q9H9V9 463 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SMURF2Q9HAU4 748 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 BCO1Q9HAY6 547 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TMEM8AQ9HCN3 771 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SAYSD1Q9NPB0 183 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 NECTIN3Q9NQS3 549 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 HELLSQ9NRZ9 838 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 OLA1Q9NTK5 396 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 IGSF9Q9P2J2 1179 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SAE1Q9UBE0 346 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 ZNF212Q9UDV6 495 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SRRDQ9UH36 339 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 DNAI1Q9UI46 699 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TMEM59LQ9UK28 342 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SCAF8Q9UPN6 1271 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 LMTK3Q96Q04 1460 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 A0A0B4J269 797 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 HMX3A6NHT5 357 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 PYCARD-AS1I3L0S3 204 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 F2RL2O00254 374 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 GSC2O15499 205 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 DAPK3O43293 454 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 SRGAP3O43295 1099 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 PSPNO60542 156 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 TIPRLO75663 272 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 FAM155BO75949 473 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 TNFRSF6BO95407 300 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 TBX18O95935 607 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 IGLV1-40P01703 118 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ITGA2BP08514 1039 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ITGA5P08648 1049 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 GNAI3P08754 354 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 IDEP14735 1019 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 FOSL1P15407 271 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ALOX15P16050 662 aaPredicted RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 RPS6KB1P23443 525 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ADD2P35612 726 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 SREBF1P36956 1147 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 LIFRP42702 1097 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 RAD52P43351 418 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 PHKA1P46020 1223 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 GLRBP48167 497 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 PIK3CGP48736 1102 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 CARSP49589 748 aaKnown RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 PAPOLAP51003 745 aaKnown RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 TERF1P54274 439 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 NR1H2P55055 460 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 CTXN1P60606 82 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 GNAI1P63096 354 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 NOMO3P69849 1222 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 NKX3-2P78367 333 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 IL13RA1P78552 427 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 PRR5P85299 388 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ZP2Q05996 745 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 EXOSC9Q06265 439 aaKnown RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 BNIP3Q12983 259 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 CTBP1Q13363 440 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 EFR3AQ14156 821 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 HABP2Q14520 560 aaPredicted RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 DLGAP5Q15398 846 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 STILQ15468 1287 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 MST1LQ2TV78 715 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ALDH1L2Q3SY69 923 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 CCDC184Q52MB2 194 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ARHGAP15Q53QZ3 475 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 EMC10Q5UCC4 262 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 KANK2Q63ZY3 851 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ARL6IP4Q66PJ3 421 aaKnown RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 LMBRD2Q68DH5 695 aaPredicted RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 KLHL17Q6TDP4 642 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 LIPIQ6XZB0 460 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 SPOCD1Q6ZMY3 1216 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 NEK10Q6ZWH5 1172 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 USP49Q70CQ1 688 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 BRINP3Q76B58 766 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 CXXC5Q7LFL8 322 aaKnown RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 TAS1R1Q7RTX1 841 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 KRT77Q7Z794 578 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ANKRD23Q86SG2 305 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ALYREFQ86V81 257 aaKnown RBP2.41□□□□□ -2.02
CHD3-217ENST00000574022 MICU3Q86XE3 530 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 PROSER1Q86XN7 944 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 C2CD5Q86YS7 1000 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 CPOQ8IVL8 374 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 HERC6Q8IVU3 1022 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 YAF2Q8IY57 180 aa2.41□□□□□ -2.02
CHD3-217ENST00000574022 ZGPATQ8N5A5 531 aaKnown RBP2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms