RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	ATRNL1	Q5VV63	1379 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028	CFAP73	A6NFT4	308 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028		H0YIN7	160 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028	ANP32D	O95626	131 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028	CDC25C	P30307	473 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028	GRK7	Q8WTQ7	553 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028	HAUS1	Q96CS2	278 aa		18.19	■□□□□ 0.5
VPS53-215	ENST00000573028	GPC3	P51654	580 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	DLGAP5	Q15398	846 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	FAM160B2	Q86V87	743 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	CEP170P1	Q96L14	293 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	QSER1	Q2KHR3	1735 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	NPM3	O75607	178 aa	Known RBP	18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	KRT10	P13645	584 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	ATF7	P17544	494 aa	Predicted RBP	18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	TAS2R40	P59535	323 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	PTK6	Q13882	451 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	ATP13A4	Q4VNC1	1196 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	TAB3	Q8N5C8	712 aa	Predicted RBP	18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	SPOCK2	Q92563	424 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	PITPNM3	Q9BZ71	974 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	LRRC37A	A6NMS7	1700 aa		18.18	■□□□□ 0.5
VPS53-215	ENST00000573028	ZSCAN5DP	P0CG00	497 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	MAPT	P10636	758 aa	Known RBP	18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	P3H1	Q32P28	736 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	RBM15	Q96T37	977 aa	Known RBP eCLIP	18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	CCDC77	Q9BR77	488 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	SAYSD1	Q9NPB0	183 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	FEM1B	Q9UK73	627 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	YDJC	A8MPS7	323 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	CCNE2	O96020	404 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	CAP2	P40123	477 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	DNAJC3	Q13217	504 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	MTM1	Q13496	603 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	ARHGEF18	Q6ZSZ5	1173 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	ACSF2	Q96CM8	615 aa	Predicted RBP	18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	KIF9	Q9HAQ2	790 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	ZNF70	Q9UC06	446 aa	Predicted RBP	18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	SUFU	Q9UMX1	484 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	CTDP1	Q9Y5B0	961 aa	Predicted RBP	18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	DIAPH2	O60879	1101 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	NCKAP1L	P55160	1127 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	PSMC5	P62195	406 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	CYP24A1	Q07973	514 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	SLC39A4	Q6P5W5	647 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	DDX27	Q96GQ7	796 aa	Known RBP	18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	OSBPL8	Q9BZF1	889 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	ATP6V0A4	Q9HBG4	840 aa		18.17	■□□□□ 0.5
VPS53-215	ENST00000573028	EXOC1L	A0A1B0GW35	172 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	EIF4E1B	A6NMX2	242 aa	Known RBP	18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	CDH16	O75309	829 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	OAS1	P00973	400 aa	Known RBP	18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	ACOT2	P49753	483 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	RPS6	P62753	249 aa	Known RBP	18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	C4orf33	Q8N1A6	199 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	MAGEC3	Q8TD91	643 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	RSRC1	Q96IZ7	334 aa	Known RBP	18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	ZNF148	Q9UQR1	794 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	PIAS1	O75925	651 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	ICAM1	P05362	532 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	KRT15	P19012	456 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	FOXN2	P32314	431 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	ANO5	Q75V66	913 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	GLIS1	Q8NBF1	620 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	KCNV2	Q8TDN2	545 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	MAIP1	Q8WWC4	291 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	FNBP1	Q96RU3	617 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	ETNK1	Q9HBU6	452 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	ADAM22	Q9P0K1	906 aa		18.16	■□□□□ 0.5
VPS53-215	ENST00000573028	SPDYE2B	A6NHP3	402 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	SPDYE6	P0CI01	402 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	ETS1	P14921	441 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	HSD17B4	P51659	736 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	BNIP1	Q12981	228 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	ZNF568	Q3ZCX4	644 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	WDR44	Q5JSH3	913 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	TMEM270	Q6UE05	265 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	ANKS1B	Q7Z6G8	1248 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	VSIG1	Q86XK7	387 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	MAP4K3	Q8IVH8	894 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	SYTL5	Q8TDW5	730 aa	Predicted RBP	18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	FAM212A	Q96EL1	285 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	IFT74	Q96LB3	600 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	RMDN3	Q96TC7	470 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	VPS37B	Q9H9H4	285 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	HARS	P12081	509 aa	Known RBP	18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	MAGEA4	P43358	317 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	PLCB3	Q01970	1234 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	MGAT5	Q09328	741 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	USP37	Q86T82	979 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	CCDC89	Q8N998	374 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	FHDC1	Q9C0D6	1143 aa	Predicted RBP	18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	SLCO1B3	Q9NPD5	702 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	GABBR1	Q9UBS5	961 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	ZNF536	O15090	1300 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	GOLGA8S	H3BPF8	625 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	GOLGA8M	H3BSY2	632 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	IFNB1	P01574	187 aa		18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	UNG	P13051	313 aa	Predicted RBP	18.15	■□□□□ 0.5
VPS53-215	ENST00000573028	MAN1A1	P33908	653 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms