RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 GLE1Q53GS7 698 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 CELF3Q5SZQ8 465 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 FAM182AQ5T1J6 154 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ARMC9Q7Z3E5 817 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 CCDC105Q8IYK2 499 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 CCDC26Q8TAB7 109 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 DDX1Q92499 740 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 IMPG2Q9BZV3 1241 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 A0A0B4J269 797 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 H0YCG3 227 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ZEB2O60315 1214 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ZBTB48P10074 688 aaPredicted RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 CD19P15391 556 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 IBSPP21815 317 aaPredicted RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 SNRPFP62306 86 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 DHX9Q08211 1270 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 SF3A3Q12874 501 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS53-206ENST00000570359 TRPC3Q13507 836 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ACAD10Q6JQN1 1059 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 LEKR1Q6ZMV7 388 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ARMCX2Q7L311 632 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 FMNL3Q8IVF7 1028 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ZBTB8OSQ8IWT0 167 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ZDHHC14Q8IZN3 488 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 FAM107BQ9H098 131 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 VIPAS39Q9H9C1 493 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 LRRC4CQ9HCJ2 640 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 TMEM59LQ9UK28 342 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 POLIQ9UNA4 740 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 PI4K2BG5E9Z4 385 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 MAPK13O15264 365 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 MAFO75444 373 aaPredicted RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 TMEM191BP0C7N4 346 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 EDNRBP24530 442 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 ADORA2AP29274 412 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 GTF2H1P32780 548 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 CTNNA1P35221 906 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 CYP4A22Q5TCH4 519 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 KAZNQ674X7 775 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 PRUNE1Q86TP1 453 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 ATP8B4Q8TF62 1192 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 LENG1Q96BZ8 264 aaPredicted RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 MRPL4Q9BYD3 311 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 COQ4Q9Y3A0 265 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 PDHXO00330 501 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 RFC5P40937 340 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 AARSP49588 968 aaKnown RBP eCLIP10.6□□□□□ -0.71
VPS53-206ENST00000570359 CDH8P55286 799 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 NNTQ13423 1086 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 TARBP2Q15633 366 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 ZSCAN26Q16670 478 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 UBAP2Q5T6F2 1119 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 SLFN12LQ6IEE8 588 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 TTC27Q6P3X3 843 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 AFG1LQ8WV93 481 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 EXOC4Q96A65 974 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 HAUS1Q96CS2 278 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 CCDC114Q96M63 670 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 MPHOSPH6Q99547 160 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 CGRRF1Q99675 332 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 NIFKQ9BYG3 293 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 ADAM22Q9P0K1 906 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 A0A087WZ62 844 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 TLDC2A0PJX2 215 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 ZBTB42B2RXF5 422 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 GOLGA8SH3BPF8 625 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 MSCO60682 206 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 CLTAP09496 248 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 IQCF3P0C7M6 154 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 ECHS1P30084 290 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 HSD17B3P37058 310 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 PSMC4P43686 418 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 RTP1P59025 263 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 PPIL2Q13356 520 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 PDCLQ13371 301 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 GPAT2Q6NUI2 795 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 JAMLQ86YT9 394 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 MCOLN2Q8IZK6 566 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 RASGEF1CQ8N431 466 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 C1orf131Q8NDD1 294 aaKnown RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 FDXACB1Q9BRP7 624 aaPredicted RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 FAM49AQ9H0Q0 323 aaPredicted RBP10.6□□□□□ -0.71
VPS53-206ENST00000570359 CARD9Q9H257 536 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 GTF3C4Q9UKN8 822 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 DAAM1Q9Y4D1 1078 aa10.6□□□□□ -0.71
VPS53-206ENST00000570359 MROH7Q68CQ1 1323 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CNTNAP2Q9UHC6 1331 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 IGKV6D-21A0A0A0MT36 114 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CCL15-CCL14A0A0B4J2E2 113 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CXCL11O14625 94 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 GRIN3BO60391 1043 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 SLC25A27O95847 323 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 INSRRP14616 1297 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 TCF4P15884 667 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 GCNT1Q02742 428 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 SNAPC2Q13487 334 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 MOGSQ13724 837 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 TTLL4Q14679 1199 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CCL15Q16663 113 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms