RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CPSF3Q9UKF6 684 aaKnown RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 PCDHA13Q9Y5I0 950 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 KIAA1217Q5T5P2 1943 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 ANO9A1A5B4 782 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 CTAGE9A4FU28 777 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 EPHB6O15197 1021 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 GPR37O15354 613 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 FKTNO75072 461 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 ADRB2P07550 413 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 CAPN2P17655 700 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 TNFAIP3P21580 790 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 EIF4BP23588 611 aaKnown RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 HOXC8P31273 242 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 ACOT2P49753 483 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 YARSP54577 528 aaKnown RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 NLRP11P59045 1033 aaKnown RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 DLG4P78352 724 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 ADAM17P78536 824 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 PURAQ00577 322 aaKnown RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 MAP2K1Q02750 393 aaPredicted RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 DRP2Q13474 957 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 BIRC3Q13489 604 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 TRPC3Q13507 836 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 CCL14Q16627 93 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 C1orf220Q5T0J3 134 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 MARCH8Q5T0T0 291 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 GJC2Q5T442 439 aaPredicted RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 HGSNATQ68CP4 663 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 DPY19L2P1Q6NXN4 242 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 NOTUMQ6P988 496 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 CRELD2Q6UXH1 353 aaPredicted RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 SYT10Q6XYQ8 523 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 USP38Q8NB14 1042 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 ZNF592Q92610 1267 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 KAT2BQ92831 832 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 SECISBP2LQ93073 1101 aaKnown RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 ACAP3Q96P50 834 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 NOX5Q96PH1 765 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 BEGAINQ9BUH8 593 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS39-213ENST00000570062 XPNPEP3Q9NQH7 507 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 CHST12Q9NRB3 414 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 TOPORSQ9NS56 1045 aaPredicted RBP8.58□□□□□ -1.04
VPS39-213ENST00000570062 SETD4Q9NVD3 440 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 TOR4AQ9NXH8 423 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 RNF186Q9NXI6 227 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 DNAI1Q9UI46 699 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 C2CD2Q9Y426 696 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 FHOD1Q9Y613 1164 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 LCTP09848 1927 aa8.58□□□□□ -1.04
VPS39-213ENST00000570062 LRRC37A2A6NM11 1700 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PLXNB2O15031 1838 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 A0A0A6YYK5 440 aaPredicted RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 A0A0U1RQG5 324 aaPredicted RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 USP27XA6NNY8 438 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TISP43B9A030 160 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 GPR25O00155 361 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ZBTB24O43167 697 aaPredicted RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 STAU1O95793 577 aaKnown RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 H2AFZP0C0S5 128 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TMEM191BP0C7N4 346 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 GZMAP12544 262 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ACTN1P12814 892 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 DARSP14868 501 aaKnown RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 PRLRP16471 622 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PAX3P23760 479 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 GRM5P41594 1212 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PIK3CAP42336 1068 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PTK2Q05397 1052 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PRKCZQ05513 592 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 NCOA4Q13772 614 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 MTF1Q14872 753 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TMEM63BQ5T3F8 832 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PHLDB3Q6NSJ2 640 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ALKBH5Q6P6C2 394 aaKnown RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 SLC27A1Q6PCB7 646 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TRIM72Q6ZMU5 477 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 H2AFVQ71UI9 128 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 CATSPER4Q7RTX7 472 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 FAM71AQ8IYT1 594 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 SYCE1Q8N0S2 351 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 CRIPAKQ8N1N5 446 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 C17orf53Q8N3J3 647 aaPredicted RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 PPM1KQ8N3J5 372 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ARRDC4Q8NCT1 418 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TRAPPC12Q8WVT3 735 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TRIB2Q92519 343 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 SHC3Q92529 594 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 TRIM11Q96F44 468 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 NAPGQ99747 312 aaPredicted RBP8.57□□□□□ -1.04
VPS39-213ENST00000570062 DESI2Q9BSY9 194 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 IKZF4Q9H2S9 585 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ADAMTS10Q9H324 1103 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 LZTFL1Q9NQ48 299 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 RNF14Q9UBS8 474 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ADAMTS1Q9UHI8 967 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 GTF2IRD1Q9UHL9 959 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 LCMT1Q9UIC8 334 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 JRKLQ9Y4A0 524 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 PCDHB2Q9Y5E7 798 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms