RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SEL1LQ9UBV2 794 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ZMAT5Q9UDW3 170 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 ACAD8Q9UKU7 415 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 CNOT11Q9UKZ1 510 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 TMCC3Q9ULS5 477 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 MAFFQ9ULX9 164 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 PLAAQ9Y263 795 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ZNF510Q9Y2H8 683 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 TMA7Q9Y2S6 64 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 TMED5Q9Y3A6 229 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SPO11Q9Y5K1 396 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SLC30A1Q9Y6M5 507 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 SCINQ9Y6U3 715 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 INSRP06213 1382 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 LRPPRCP42704 1394 aaKnown RBP3.61□□□□□ -1.83
VPS35-208ENST00000568612 CCNB3Q8WWL7 1395 aa3.61□□□□□ -1.83
VPS35-208ENST00000568612 ABCA10Q8WWZ4 1543 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 FAM25EA8MYX2 175 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 LIN7AO14910 233 aaPredicted RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 ARHGAP6O43182 974 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CEP104O60308 925 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 PDE8AO60658 829 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 KIAA0754O94854 1291 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 F2P00734 622 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 TSPY4P0CV99 314 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 TSPY10P0CW01 314 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 ZFXP17010 805 aaPredicted RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 DESP17661 470 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CR2P20023 1033 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CA8P35219 290 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CCT8P50990 548 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 PSMD7P51665 324 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CSE1LP55060 971 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 ADAM17P78536 824 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 ADAM15Q13444 863 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 ICAM4Q14773 271 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 MYBPC3Q14896 1274 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 EIF4HQ15056 248 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 RCN1Q15293 331 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 SEPT7Q16181 437 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 TBR1Q16650 682 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 TMEM200BQ69YZ2 307 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 ESRP1Q6NXG1 681 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 SLC30A9Q6PML9 568 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 NEK10Q6ZWH5 1172 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 SKAP1Q86WV1 359 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 NME9Q86XW9 330 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 RPAP2Q8IXW5 612 aaPredicted RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 SAMD14Q8IZD0 417 aaPredicted RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 SLC7A5P1Q8MH63 180 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 SPC24Q8NBT2 197 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 OR2W6PQ8NHA6 318 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 TEKT4Q8WW24 435 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 RPGRQ92834 1020 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 GTF3C6Q969F1 213 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 ZKSCAN4Q969J2 545 aaPredicted RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 VMP1Q96GC9 406 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CABS1Q96KC9 395 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 OR14A2Q96R54 314 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 RUFY1Q96T51 708 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CAPS2Q9BXY5 557 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 MTFR1LQ9H019 292 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 OR10A2Q9H208 303 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 CCDC68Q9H2F9 335 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 DHX36Q9H2U1 1008 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 POFUT1Q9H488 388 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 PRKRIP1Q9H875 184 aaPredicted RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 SEC61A2Q9H9S3 476 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 GABBR1Q9UBS5 961 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 RCAN3Q9UKA8 241 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 OAZ3Q9UMX2 235 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 TCAF1Q9Y4C2 921 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.6□□□□□ -1.83
VPS35-208ENST00000568612 MRFAP1Q9Y605 127 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 GMEB1Q9Y692 573 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 ELP1O95163 1332 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 PPIP5K1Q6PFW1 1433 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 KIF27Q86VH2 1401 aa3.6□□□□□ -1.83
VPS35-208ENST00000568612 TOP2AP11388 1531 aaKnown RBP3.6□□□□□ -1.83
VPS35-208ENST00000568612 TLDC2A0PJX2 215 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 GOLGA6L9A6NEM1 432 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ENO4A6NNW6 628 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 GOLGA8BA8MQT2 603 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 TMEM232C9JQI7 657 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CHL1O00533 1208 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ENPP3O14638 875 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 STAM2O75886 525 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 INSRRP14616 1297 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 IDO1P14902 403 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 FERP16591 822 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CCNCP24863 283 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CD40P25942 277 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 OAS2P29728 719 aaKnown RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 MAN1A1P33908 653 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 LMAN1P49257 510 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 PAPOLAP51003 745 aaKnown RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 INHBCP55103 352 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 SH3BGRP55822 239 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 EVA1CP58658 441 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ARPC4P59998 168 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms