RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 UPP2O95045 317 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 CDK11BP21127 795 aaKnown RBP9.15□□□□□ -0.94
SF3B3-212ENST00000568539 MTIF2P46199 727 aaKnown RBP9.15□□□□□ -0.94
SF3B3-212ENST00000568539 GATMP50440 423 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 SCNN1GP51170 649 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 PPP3CAQ08209 521 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 TMEM132DQ14C87 1099 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 SHHQ15465 462 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 NAB2Q15742 525 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 MAN2A1Q16706 1144 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 NOMO2Q5JPE7 1267 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 MIIPQ5JXC2 388 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 GLRA4Q5JXX5 417 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 TCERG1LQ5VWI1 586 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 NT5DC4Q86YG4 428 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 ABI1Q8IZP0 508 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 OR5B17Q8NGF7 314 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 PHOSPHO2Q8TCD6 241 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 RSPH1Q8WYR4 309 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 ZNF516Q92618 1163 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 ZNF689Q96CS4 500 aaPredicted RBP9.15□□□□□ -0.94
SF3B3-212ENST00000568539 FAM84AQ96KN4 292 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 CASD1Q96PB1 797 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 PPP1R10Q96QC0 940 aaKnown RBP9.15□□□□□ -0.94
SF3B3-212ENST00000568539 RPS6KC1Q96S38 1066 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 SLC9A7Q96T83 725 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 TMEM117Q9H0C3 514 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 MTIF3Q9H2K0 278 aaKnown RBP9.15□□□□□ -0.94
SF3B3-212ENST00000568539 RC3H2Q9HBD1 1191 aaKnown RBP9.15□□□□□ -0.94
SF3B3-212ENST00000568539 INTS13Q9NVM9 706 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 MIOSQ9NXC5 875 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 TAB2Q9NYJ8 693 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 INPP5FQ9Y2H2 1132 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 SLC4A7Q9Y6M7 1214 aa9.15□□□□□ -0.94
SF3B3-212ENST00000568539 KAT6AQ92794 2004 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 STX10O60499 249 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 GJB5O95377 273 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 POMCP01189 267 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 AFPP02771 609 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 C4BPAP04003 597 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 THP07101 528 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 ATP2A2P16615 1042 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 TNNI1P19237 187 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 GTF2H1P32780 548 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 BMP8BP34820 402 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 GCLMP48507 274 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 COPB1P53618 953 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 AP3M2P53677 418 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 TFAMQ00059 246 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 SOX4Q06945 474 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 KCNH2Q12809 1159 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 GRIK3Q13003 919 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 DUOXA2Q1HG44 320 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 ZACNQ401N2 412 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 CBWD6Q4V339 395 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 VWA3BQ502W6 1294 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 CBWD3Q5JTY5 395 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 CBWD5Q5RIA9 395 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 LMBRD2Q68DH5 695 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 FAM117BQ6P1L5 589 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 C15orf39Q6ZRI6 1047 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 SV2AQ7L0J3 742 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 HERC6Q8IVU3 1022 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 ANKRD20A12PQ8NF67 263 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 URGCPQ8TCY9 931 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 C18orf25Q96B23 403 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 RNPC3Q96LT9 517 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 UBE2OQ9C0C9 1292 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 MTMR12Q9C0I1 747 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 VPS16Q9H269 839 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 PRO3102Q9H379 93 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 NDST4Q9H3R1 872 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 TMEM8AQ9HCN3 771 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 SLC38A7Q9NVC3 462 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 TBC1D13Q9NVG8 400 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 KANSL3Q9P2N6 904 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 TUBGCP4Q9UGJ1 667 aa9.14□□□□□ -0.95
SF3B3-212ENST00000568539 UBQLN1Q9UMX0 589 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 LAMA2P24043 3122 aaKnown RBP9.14□□□□□ -0.95
SF3B3-212ENST00000568539 A0A1B0GTH6 734 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 FSD2A1L4K1 749 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TBKBP1A7MCY6 615 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 LGALS16A8MUM7 142 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 PMM2O15305 246 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 AP5Z1O43299 807 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 XPOTO43592 962 aaKnown RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 B4GALT3O60512 393 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 DDHD2O94830 711 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 SERPINC1P01008 464 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TNNC2P02585 160 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TPM2P07951 284 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 TMEM191BP0C7N4 346 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 HOXB3P14651 431 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 CYP3A5P20815 502 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 LRPAP1P30533 357 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 FMO5P49326 533 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 MXI1P50539 228 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 GUCY2FP51841 1108 aa9.13□□□□□ -0.95
SF3B3-212ENST00000568539 HTRA4P83105 476 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-212ENST00000568539 FANCCQ00597 558 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms