RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RHOT1Q8IXI2 618 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 ASB10Q8WXI3 467 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 ZNF764Q96H86 408 aaPredicted RBP3.91□□□□□ -1.78
VPS35-207ENST00000568191 Q96MF0 132 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 VTA1Q9NP79 307 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 ADARB2Q9NS39 739 aaKnown RBP3.91□□□□□ -1.78
VPS35-207ENST00000568191 TDP1Q9NUW8 608 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 MKS1Q9NXB0 559 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 SLC5A4Q9NY91 659 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 INTUQ9ULD6 942 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 NEU2Q9Y3R4 380 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 ACTL7AQ9Y615 435 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 SPATA31A6Q5VVP1 1343 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 MYBBP1AQ9BQG0 1328 aaKnown RBP3.91□□□□□ -1.78
VPS35-207ENST00000568191 TRGV11A0A075B6L2 103 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 PEX1O43933 1283 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 C1RP00736 705 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 MTHFD1P11586 935 aaKnown RBP3.9□□□□□ -1.79
VPS35-207ENST00000568191 AGXTP21549 392 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 FBLP22087 321 aaKnown RBP3.9□□□□□ -1.79
VPS35-207ENST00000568191 OCA2Q04671 838 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 ACAP2Q15057 778 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 B3GNTL1Q67FW5 361 aaPredicted RBP3.9□□□□□ -1.79
VPS35-207ENST00000568191 NECAB2Q7Z6G3 386 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 TBC1D15Q8TC07 691 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 HOXB13Q92826 284 aaPredicted RBP3.9□□□□□ -1.79
VPS35-207ENST00000568191 HDAC10Q969S8 669 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 NEU1Q99519 415 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 ZSWIM1Q9BR11 485 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 AIFM2Q9BRQ8 373 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 SPATA5L1Q9BVQ7 753 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 C11orf54Q9H0W9 315 aaPredicted RBP3.9□□□□□ -1.79
VPS35-207ENST00000568191 GSTO2Q9H4Y5 243 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 SYNPO2LQ9H987 977 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 SPC25Q9HBM1 224 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 MAN1C1Q9NR34 630 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 RUVBL1Q9Y265 456 aaKnown RBP3.9□□□□□ -1.79
VPS35-207ENST00000568191 COX11Q9Y6N1 276 aa3.9□□□□□ -1.79
VPS35-207ENST00000568191 CCDC151A5D8V7 595 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 K7ESF4 209 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 MPLP40238 635 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 WASP42768 502 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 VAV2P52735 878 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 CTXN1P60606 82 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 ZNF844Q08AG5 666 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 FOXI1Q12951 378 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 MTM1Q13496 603 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 FBXO42Q6P3S6 717 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 GPR149Q86SP6 731 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 PPM1NQ8N819 430 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 SIMC1Q8NDZ2 872 aa3.89□□□□□ -1.79
VPS35-207ENST00000568191 FUBP1Q96AE4 644 aaKnown RBP3.89□□□□□ -1.79
VPS35-207ENST00000568191 MARS2Q96GW9 593 aaKnown RBP3.89□□□□□ -1.79
VPS35-207ENST00000568191 ZNF277Q9NRM2 450 aaPredicted RBP3.89□□□□□ -1.79
VPS35-207ENST00000568191 TCRBV7S2A1N4TA0A589 114 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 KLHL33A6NCF5 533 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 TRIM75PA6NK02 468 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 HAUS5O94927 633 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 ELANEP08246 267 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 CDK4P11802 303 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 FPR1P21462 350 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 SLC6A2P23975 617 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 PCSK1P29120 753 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 ZNF169Q14929 603 aaPredicted RBP3.88□□□□□ -1.79
VPS35-207ENST00000568191 SEPT2Q15019 361 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 CYP2A13Q16696 494 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 DACT2Q5SW24 774 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 SP5Q6BEB4 398 aaPredicted RBP3.88□□□□□ -1.79
VPS35-207ENST00000568191 GADL1Q6ZQY3 521 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 CLNKQ7Z7G1 428 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 CNTD1Q8N815 330 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 BOLLQ8N9W6 283 aaKnown RBP3.88□□□□□ -1.79
VPS35-207ENST00000568191 ACTRT2Q8TDY3 377 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 COG1Q8WTW3 980 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 NRG4Q8WWG1 115 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 VOPP1Q96AW1 172 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 PACSIN1Q9BY11 444 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 FBXO34Q9NWN3 711 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 SLC17A6Q9P2U8 582 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 SLC23A1Q9UHI7 598 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 USP25Q9UHP3 1055 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 AATKQ6ZMQ8 1374 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 PHLDB1Q86UU1 1377 aa3.88□□□□□ -1.79
VPS35-207ENST00000568191 CDHR4A6H8M9 788 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 SLC6A9P48067 706 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 RARRES1P49788 294 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 C21orf58P58505 322 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 ERVK-21P61565 698 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 RPS7P62081 194 aaKnown RBP3.87□□□□□ -1.79
VPS35-207ENST00000568191 CDC42EP1Q00587 391 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 FPGSQ05932 587 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 PIGFQ07326 219 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 RAB39AQ14964 217 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 PREPLQ4J6C6 727 aaPredicted RBP3.87□□□□□ -1.79
VPS35-207ENST00000568191 PABPC1LQ4VXU2 614 aaKnown RBP3.87□□□□□ -1.79
VPS35-207ENST00000568191 AKNAD1Q5T1N1 836 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 LHFPL2Q6ZUX7 228 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 GRASPQ7Z6J2 395 aaPredicted RBP3.87□□□□□ -1.79
VPS35-207ENST00000568191 DPF2Q92785 391 aa3.87□□□□□ -1.79
VPS35-207ENST00000568191 TMX3Q96JJ7 454 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms