RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 ACAP3Q96P50 834 aa16.35■□□□□ 0.21
CLN3-228ENST00000567804 KXD1Q9BQD3 176 aa16.35■□□□□ 0.21
CLN3-228ENST00000567804 CNTN3Q9P232 1028 aa16.35■□□□□ 0.21
CLN3-228ENST00000567804 COL4A2P08572 1712 aa16.35■□□□□ 0.21
CLN3-228ENST00000567804 DCHS1Q96JQ0 3298 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 ARHGEF37A1IGU5 675 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 WDR27A2RRH5 827 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 SYN3O14994 580 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 SLC16A4O15374 487 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 MEFVO15553 781 aaPredicted RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 ABLIM3O94929 683 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 GLULP15104 373 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 GUCY2CP25092 1073 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 SNW1Q13573 536 aaKnown RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 MLF2Q15773 248 aaPredicted RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 SLC5A9Q2M3M2 681 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 ZNF461Q8TAF7 563 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 ING5Q8WYH8 240 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 NTPCRQ9BSD7 190 aaKnown RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 TCHPQ9BT92 498 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 DDX23Q9BUQ8 820 aaKnown RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 TIPINQ9BVW5 301 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 SEMA4AQ9H3S1 761 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 AVENQ9NQS1 362 aaPredicted RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 MRPS23Q9Y3D9 190 aaKnown RBP16.34■□□□□ 0.21
CLN3-228ENST00000567804 R4GN57 208 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 TICRRQ7Z2Z1 1910 aa16.34■□□□□ 0.21
CLN3-228ENST00000567804 KANSL1LA0AUZ9 987 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 SFI1A8K8P3 1242 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 TBC1D4O60343 1298 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 LRRN2O75325 713 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 LRG1P02750 347 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 RHOP08100 348 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 HARSP12081 509 aaKnown RBP16.33■□□□□ 0.2
CLN3-228ENST00000567804 RPL9P32969 192 aaKnown RBP16.33■□□□□ 0.2
CLN3-228ENST00000567804 PRKCQQ04759 706 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 HYIQ5T013 277 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 C1orf210Q8IVY1 113 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 SPIRE2Q8WWL2 714 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 C18orf25Q96B23 403 aaPredicted RBP16.33■□□□□ 0.2
CLN3-228ENST00000567804 ZBTB45Q96K62 511 aaPredicted RBP16.33■□□□□ 0.2
CLN3-228ENST00000567804 PNMA5Q96PV4 448 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 NUB1Q9Y5A7 615 aa16.33■□□□□ 0.2
CLN3-228ENST00000567804 EP300Q09472 2414 aaPredicted RBP16.33■□□□□ 0.2
CLN3-228ENST00000567804 ECI2O75521 394 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 LMNAP02545 664 aaKnown RBP16.32■□□□□ 0.2
CLN3-228ENST00000567804 SP9P0CG40 484 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 ATF2P15336 505 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 PTPN2P17706 415 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 ELF1P32519 619 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 ATP2C1P98194 919 aaPredicted RBP16.32■□□□□ 0.2
CLN3-228ENST00000567804 PFKPQ01813 784 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 RAD51AP2Q09MP3 1159 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 MRPL58Q14197 206 aaKnown RBP16.32■□□□□ 0.2
CLN3-228ENST00000567804 NOLC1Q14978 699 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLN3-228ENST00000567804 ZRSR1Q15695 479 aaKnown RBP16.32■□□□□ 0.2
CLN3-228ENST00000567804 SLC44A4Q53GD3 710 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 RILPL1Q5EBL4 403 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 POTEHQ6S545 545 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 TCEAL8Q8IYN2 117 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 TMEM161BQ8NDZ6 487 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 MCRS1Q96EZ8 462 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 GDE1Q9NZC3 331 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 ANKFY1Q9P2R3 1169 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 KIF3AQ9Y496 699 aa16.32■□□□□ 0.2
CLN3-228ENST00000567804 TSC2P49815 1807 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 H7C4K7 107 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 PRRG1O14668 218 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 TOM1L1O75674 476 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 SEC24AO95486 1093 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 PLS3P13797 630 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 CEBPBP17676 345 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 ARPP19P56211 112 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 STRN3Q13033 797 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 SLC10A6Q3KNW5 377 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 SEZ6Q53EL9 994 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 PRSS36Q5K4E3 855 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 ZC3H14Q6PJT7 736 aaKnown RBP16.31■□□□□ 0.2
CLN3-228ENST00000567804 ZPBP2Q6X784 338 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 KCTD17Q8N5Z5 321 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 SYT2Q8N9I0 419 aaPredicted RBP16.31■□□□□ 0.2
CLN3-228ENST00000567804 KCNG4Q8TDN1 519 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 SUSD3Q96L08 255 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 OSBPL6Q9BZF3 934 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 PLA2G2FQ9BZM2 168 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 CYP4F11Q9HBI6 524 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 KCNG1Q9UIX4 513 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 FBXL5Q9UKA1 691 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 OTOGLQ3ZCN5 2332 aa16.31■□□□□ 0.2
CLN3-228ENST00000567804 TCHHQ07283 1943 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 MAPTP10636 758 aaKnown RBP16.3■□□□□ 0.2
CLN3-228ENST00000567804 MCM4P33991 863 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 SMTNP53814 917 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 SLC12A3P55017 1021 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 UBXN2BQ14CS0 331 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 TPGS2Q68CL5 300 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 MCTP1Q6DN14 999 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 ZNF280DQ6N043 979 aa16.3■□□□□ 0.2
CLN3-228ENST00000567804 MAML2Q8IZL2 1156 aaPredicted RBP16.3■□□□□ 0.2
CLN3-228ENST00000567804 DDX12PQ92771 950 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms