RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TOMM70O94826 608 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 SLC10A3P09131 477 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 MARCKSL1P49006 195 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 VAMP7P51809 220 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 SARNPP82979 210 aaKnown RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 FSTL1Q12841 308 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 NEDD9Q14511 834 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 MESDQ14696 234 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 MFSD5Q6N075 450 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 VSIG10LQ86VR7 867 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 CCDC105Q8IYK2 499 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ZDHHC14Q8IZN3 488 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ZNF577Q9BSK1 485 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ROPN1BQ9BZX4 212 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 TMEM206Q9H813 350 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ROPN1Q9HAT0 212 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 WRAP73Q9P2S5 460 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 KIAA1217Q5T5P2 1943 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 SMIM23A6NLE4 172 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 TMEM110-MUSTN1A8MSY1 372 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 FAM155AB1AL88 458 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 HIP1RO75146 1068 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 PGK2P07205 417 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 COILP38432 576 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 DLG4P78352 724 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ALCAMQ13740 583 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 EPC2Q52LR7 807 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 SLC13A5Q86YT5 568 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ARHGEF19Q8IW93 802 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 GPRC5AQ8NFJ5 357 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 CD101Q93033 1021 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 PRMT1Q99873 361 aaKnown RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 NSRP1Q9H0G5 558 aaKnown RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 FAM170AA1A519 330 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 TMEM88BA6NKF7 163 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 IPO5O00410 1097 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 PYGMP11217 842 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 SLC8A1P32418 973 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 PPP3CAQ08209 521 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 GRM1Q13255 1194 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 MTMR1Q13613 665 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 C12orf56Q8IXR9 622 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 LRRC34Q8IZ02 419 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 EPS8L3Q8TE67 593 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 ZIC5Q96T25 663 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 PARK7Q99497 189 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 LXNQ9BS40 222 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 UNC45AQ9H3U1 944 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 LARSQ9P2J5 1176 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 TPX2Q9ULW0 747 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 SOWAHBA6NEL2 793 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 MANSC4A6NHS7 340 aaPredicted RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 RGS20O76081 388 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 MAPTP10636 758 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 CCND2P30279 289 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 AUHQ13825 339 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 B3GNT9Q6UX72 402 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 TRMT10CQ7L0Y3 403 aaKnown RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 FAM228AQ86W67 206 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 DAW1Q8N136 415 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 C12orf50Q8NA57 414 aaPredicted RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 GTF3C2Q8WUA4 911 aaPredicted RBP14.13□□□□□ -0.15
VPS4A-204ENST00000566354 TEKT3Q9BXF9 490 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 HOMER3Q9NSC5 361 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 SLC12A4Q9UP95 1085 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 USP20Q9Y2K6 914 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 MYH11P35749 1972 aa14.13□□□□□ -0.15
VPS4A-204ENST00000566354 K7ENM7 598 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 DDX39AO00148 427 aaKnown RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 PMM2O15305 246 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 VIMP08670 466 aaKnown RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 FGFR4P22455 802 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 GCLCP48506 637 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 GCLMP48507 274 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 CALCOCO2Q13137 446 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 NIPA1Q7RTP0 329 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 FAM71AQ8IYT1 594 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 PCDHB18PQ96TA0 734 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 MMP19Q99542 508 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 ELAC2Q9BQ52 826 aaKnown RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 MAF1Q9H063 256 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 MROH8Q9H579 483 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 AGO4Q9HCK5 861 aaKnown RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 NOCTQ9UK39 431 aaKnown RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 MAPK13O15264 365 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 SPOPO43791 374 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 ATP9AO75110 1047 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 RARAP10276 462 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 EZRP15311 586 aaKnown RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 CHRNB2P17787 502 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 SLCO1A2P46721 670 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 PDE6CP51160 858 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 ALDH5A1P51649 535 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 ELF3P78545 371 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 KCTD2Q14681 263 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 CNGA2Q16280 664 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 ZNF746Q6NUN9 644 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-204ENST00000566354 PADI6Q6TGC4 694 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 TRPM8Q7Z2W7 1104 aa14.12□□□□□ -0.15
VPS4A-204ENST00000566354 CEP57Q86XR8 500 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms