RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 APTXQ7Z2E3 356 aaKnown RBP22.29■■□□□ 1.16
CLN3-212ENST00000564574 OR5B17Q8NGF7 314 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 UROC1Q96N76 676 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 FAM193BQ96PV7 902 aaPredicted RBP22.29■■□□□ 1.16
CLN3-212ENST00000564574 YME1L1Q96TA2 773 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 MTMR12Q9C0I1 747 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 DPP3Q9NY33 737 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 ITGA11Q9UKX5 1188 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 PLAGL2Q9UPG8 496 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 CARNS1A5YM72 827 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 SERPINC1P01008 464 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 LRPAP1P30533 357 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 FANCCQ00597 558 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 DSC1Q08554 894 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 CETN1Q12798 172 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 SV2AQ7L0J3 742 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 TRAPPC11Q7Z392 1133 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 TMCO2Q7Z6W1 182 aaPredicted RBP22.28■■□□□ 1.16
CLN3-212ENST00000564574 RAD9AQ99638 391 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 VPS16Q9H269 839 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 TUBGCP4Q9UGJ1 667 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 GBF1Q92538 1859 aa22.28■■□□□ 1.16
CLN3-212ENST00000564574 CEP290O15078 2479 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 RPL9P32969 192 aaKnown RBP22.27■■□□□ 1.16
CLN3-212ENST00000564574 MYL7Q01449 175 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 BIRC3Q13489 604 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 BTG3Q14201 252 aaPredicted RBP22.27■■□□□ 1.16
CLN3-212ENST00000564574 TDRD10Q5VZ19 366 aaKnown RBP22.27■■□□□ 1.16
CLN3-212ENST00000564574 CHRDL2Q6WN34 429 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 C1orf127Q8N9H9 656 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 C18orf25Q96B23 403 aaPredicted RBP22.27■■□□□ 1.16
CLN3-212ENST00000564574 DDX27Q96GQ7 796 aaKnown RBP22.27■■□□□ 1.16
CLN3-212ENST00000564574 TMEM175Q9BSA9 504 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 MMRN2Q9H8L6 949 aa22.27■■□□□ 1.16
CLN3-212ENST00000564574 KIAA1671Q9BY89 1806 aa22.27■■□□□ 1.15
CLN3-212ENST00000564574 GTPBP10A4D1E9 387 aaKnown RBP22.26■■□□□ 1.15
CLN3-212ENST00000564574 PHACTR2O75167 634 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 FXR1P51114 621 aaKnown RBP eCLIP22.26■■□□□ 1.15
CLN3-212ENST00000564574 SOX4Q06945 474 aaPredicted RBP22.26■■□□□ 1.15
CLN3-212ENST00000564574 CBWD6Q4V339 395 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 PAN2Q504Q3 1202 aaKnown RBP22.26■■□□□ 1.15
CLN3-212ENST00000564574 CBWD3Q5JTY5 395 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 CBWD5Q5RIA9 395 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 FKBP15Q5T1M5 1219 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 COLGALT2Q8IYK4 626 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 SP7Q8TDD2 431 aaPredicted RBP22.26■■□□□ 1.15
CLN3-212ENST00000564574 NRDE2Q9H7Z3 1164 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 COQ4Q9Y3A0 265 aa22.26■■□□□ 1.15
CLN3-212ENST00000564574 R3HCC1Q9Y3T6 440 aaKnown RBP22.26■■□□□ 1.15
CLN3-212ENST00000564574 A0A1B0GTH6 734 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 LGALS16A8MUM7 142 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 PES1O00541 588 aaKnown RBP22.25■■□□□ 1.15
CLN3-212ENST00000564574 TLL1O43897 1013 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 DDHD2O94830 711 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 ITGB3P05106 788 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 RBP5P82980 135 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 TRPC3Q13507 836 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 SARM1Q6SZW1 724 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 ZNF280BQ86YH2 543 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 TDHQ8IZJ6 230 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 FBXL13Q8NEE6 735 aa22.25■■□□□ 1.15
CLN3-212ENST00000564574 ANO9A1A5B4 782 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 GOLGA6L3A6NEY3 463 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 CBFA2T2O43439 604 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 TPM3P06753 285 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 PAX3P23760 479 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 GUCY2FP51841 1108 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 UBASH3AP57075 661 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 C9orf57Q5W0N0 161 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 FIBCD1Q8N539 461 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 LRRC52Q8N7C0 313 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 CXorf38Q8TB03 319 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 ZNF560Q96MR9 790 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 CWH43Q9H720 699 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 GOLGA2P5Q9HBQ8 144 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 RTN4Q9NQC3 1192 aaKnown RBP22.24■■□□□ 1.15
CLN3-212ENST00000564574 SIX4Q9UIU6 781 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 NLRC5Q86WI3 1866 aa22.24■■□□□ 1.15
CLN3-212ENST00000564574 SCN1AP35498 2009 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.23■■□□□ 1.15
CLN3-212ENST00000564574 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.23■■□□□ 1.15
CLN3-212ENST00000564574 PODXLO00592 558 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 PIRO00625 290 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 VNN1O95497 513 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 STAU1O95793 577 aaKnown RBP22.23■■□□□ 1.15
CLN3-212ENST00000564574 HLA-DRAP01903 254 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 KRT19P08727 400 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 LAG3P18627 525 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 POLR2BP30876 1174 aaKnown RBP22.23■■□□□ 1.15
CLN3-212ENST00000564574 ATICP31939 592 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 PNPLA4P41247 253 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 PIK3CAP42336 1068 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 NCOA4Q13772 614 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 EPC2Q52LR7 807 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 GBP6Q6ZN66 633 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 TAS1R2Q8TE23 839 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 TAF4BQ92750 862 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 FAM84AQ96KN4 292 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 PRO3102Q9H379 93 aa22.23■■□□□ 1.15
CLN3-212ENST00000564574 RAB20Q9NX57 234 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms