RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZMIZ1Q9ULJ6 1067 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 GDAQ9Y2T3 454 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 BACE2Q9Y5Z0 518 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ABCA7Q8IZY2 2146 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ASCC3Q8N3C0 2202 aaKnown RBP8.09□□□□□ -1.12
VPS4A-203ENST00000564399 KIF26AQ9ULI4 1882 aaPredicted RBP8.09□□□□□ -1.12
VPS4A-203ENST00000564399 FRYQ5TBA9 3013 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ARHGEF37A1IGU5 675 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 SLC38A8A6NNN8 435 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 HEPACAM2A8MVW5 462 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 C1QTNF9BB2RNN3 333 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 I3L4J1 428 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 K7ESF4 209 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 M0R2N6 131 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 NRG2O14511 850 aaPredicted RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CPLX1O14810 134 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 TM4SF5O14894 197 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 N4BP3O15049 544 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 TBX3O15119 743 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CCNT1O60563 726 aaKnown RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 MICAL2O94851 1124 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 BAG4O95429 457 aaKnown RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ZNF806P0C7X5 589 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 C1QTNF9P0C862 333 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CCDC192P0DO97 292 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 MYL4P12829 197 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 GCFC2P16383 781 aaKnown RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 GJA1P17302 382 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 LIG1P18858 919 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CCR2P41597 374 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 BRCC3P46736 316 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 SOX9P48436 509 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ROR1Q01973 937 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 GLRA4Q5JXX5 417 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 PRSS36Q5K4E3 855 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 DGKKQ5KSL6 1271 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 PSAPL1Q6NUJ1 521 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 C1orf228Q6PIY5 440 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 UNQ6494/PRO21346Q6UXR6 183 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 Q6ZS52 159 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 MAEAQ7L5Y9 396 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 NEK8Q86SG6 692 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 NOSTRINQ8IVI9 506 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 MFSD6LQ8IWD5 586 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ZBTB8OSQ8IWT0 167 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ZSCAN18Q8TBC5 510 aaPredicted RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 HAS1Q92839 578 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 PRIMPOLQ96LW4 560 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ZNF512Q96ME7 567 aaPredicted RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ZSWIM3Q96MP5 696 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 LSM14BQ9BX40 385 aaKnown RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CXCL16Q9H2A7 254 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 C8orf33Q9H7E9 229 aaPredicted RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 KCNMB3Q9NPA1 279 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 COL4A2P08572 1712 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CITO14578 2027 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 NUP205Q92621 2012 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 CACNA1EQ15878 2313 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 NID2Q14112 1375 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 ZNF638Q14966 1978 aaKnown RBP8.08□□□□□ -1.12
VPS4A-203ENST00000564399 PI4KAP42356 2102 aa8.08□□□□□ -1.12
VPS4A-203ENST00000564399 TMEM189-UBE2V1I3L0A0 370 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 USO1O60763 962 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 RPP40O75818 363 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 ABLIM3O94929 683 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 SLITRK3O94933 977 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 PAPSS2O95340 614 aaPredicted RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 DEXIO95424 95 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 SEC24AO95486 1093 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 PRKCBP05771 671 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 ATF2P15336 505 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 IGFBP6P24592 240 aaPredicted RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 PDIA3P30101 505 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 HOXC13P31276 330 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 RBM25P49756 843 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 NOVA1P51513 510 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 CLCNKBP51801 687 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 FOXC1Q12948 553 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 PRPF4BQ13523 1007 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 NAB2Q15742 525 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 RNF43Q68DV7 783 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 GALNT17Q6IS24 598 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 SLC8B1Q6J4K2 584 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 CACNA2D4Q7Z3S7 1137 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 WDR5BQ86VZ2 330 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 TCEAL8Q8IYN2 117 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 HS6ST3Q8IZP7 471 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 DAGLBQ8NCG7 672 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 TTC8Q8TAM2 541 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 GAB3Q8WWW8 586 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 E2F7Q96AV8 911 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 MSANTD3Q96H12 275 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 LOXL4Q96JB6 756 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 UROC1Q96N76 676 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 NAP1L4Q99733 375 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 EIF2AK1Q9BQI3 630 aaKnown RBP8.07□□□□□ -1.12
VPS4A-203ENST00000564399 SMOC1Q9H4F8 434 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 PDZD7Q9H5P4 517 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 GOLGA2P5Q9HBQ8 144 aa8.07□□□□□ -1.12
VPS4A-203ENST00000564399 ASAH2Q9NR71 780 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms