RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 FAM189BP81408 668 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 ROM1Q03395 351 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 EIF4A2Q14240 407 aaKnown RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 VPS72Q15906 364 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 ANKRD45Q5TZF3 282 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 YOD1Q5VVQ6 348 aaPredicted RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 GDF7Q7Z4P5 450 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 SUGP2Q8IX01 1082 aaKnown RBP eCLIP2.97□□□□□ -1.93
SPG11-223ENST00000560858 RPAP2Q8IXW5 612 aaPredicted RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 LILRA3Q8N6C8 439 aaPredicted RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 C8orf58Q8NAV2 365 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 ABCF1Q8NE71 845 aaKnown RBP eCLIP2.97□□□□□ -1.93
SPG11-223ENST00000560858 OR5AN1Q8NGI8 311 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 COG3Q96JB2 828 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 THUMPD2Q9BTF0 503 aaKnown RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 CCSER2Q9H7U1 834 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 KMT5AQ9NQR1 393 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.97□□□□□ -1.93
SPG11-223ENST00000560858 ALS2Q96Q42 1657 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 RGPD5Q99666 1765 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 COL22A1Q8NFW1 1626 aaPredicted RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 TJP1Q07157 1748 aa2.96□□□□□ -1.93
SPG11-223ENST00000560858 NUP188Q5SRE5 1749 aa2.96□□□□□ -1.93
SPG11-223ENST00000560858 ECM29Q5VYK3 1845 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 ADGRL3Q9HAR2 1447 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 MYH7P12883 1935 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 FAM83GA6ND36 823 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 DIRC3C9JPN6 131 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 RRP9O43818 475 aaKnown RBP2.96□□□□□ -1.94
SPG11-223ENST00000560858 DNAJC6O75061 913 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 RBMXL2O75526 392 aaKnown RBP2.96□□□□□ -1.94
SPG11-223ENST00000560858 STC2O76061 302 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 REC8O95072 547 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 SDSP20132 328 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 APOBEC3AP31941 199 aaPredicted RBP2.96□□□□□ -1.94
SPG11-223ENST00000560858 HDLBPQ00341 1268 aaKnown RBP2.96□□□□□ -1.94
SPG11-223ENST00000560858 SLC6A3Q01959 620 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 MPP3Q13368 585 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 CUL4AQ13619 759 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 RRS1Q15050 365 aaKnown RBP2.96□□□□□ -1.94
SPG11-223ENST00000560858 CATSPEREQ5SY80 951 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 BRAPQ7Z569 592 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 ZSCAN30Q86W11 494 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 PLXDC1Q8IUK5 500 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 NOSTRINQ8IVI9 506 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 ST13P5Q8NFI4 369 aaPredicted RBP2.96□□□□□ -1.94
SPG11-223ENST00000560858 DLG3Q92796 817 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 MEIS3Q99687 375 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 CDC6Q99741 560 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 C1QTNF7Q9BXJ2 289 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 LMBRD1Q9NUN5 540 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 RNF181Q9P0P0 153 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 CLCA2Q9UQC9 943 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 PCDHA9Q9Y5H5 950 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 B3GALT1Q9Y5Z6 326 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 PAPPAQ13219 1627 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 SPEF2Q9C093 1822 aa2.96□□□□□ -1.94
SPG11-223ENST00000560858 MAP3K19Q56UN5 1328 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ADAMTSL3P82987 1691 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 UBR2Q8IWV8 1755 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 SLC12A8A0AV02 714 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 NRP1O14786 923 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ERC2O15083 957 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 MAFGO15525 162 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 MTSS1O43312 755 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ZNF500O60304 480 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 HMMRO75330 724 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 MBD3O95983 291 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 HSP90AA1P07900 732 aaKnown RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 MCM2P49736 904 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 CCT4P50991 539 aaKnown RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 PDE1AP54750 535 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ANAPC15P60006 121 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 MXRA7P84157 204 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 SRSF4Q08170 494 aaKnown RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 MAN2A1Q16706 1144 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 BEAN1Q3B7T3 259 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ZSCAN23Q3MJ62 389 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 TM4SF20Q53R12 229 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 CASC1Q6TDU7 716 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 C1QL2Q7Z5L3 287 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 BMP8AQ7Z5Y6 402 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ARHGEF25Q86VW2 580 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 CPEB3Q8NE35 698 aaKnown RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 OR52N2Q8NGI0 321 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 OTUD7AQ8TE49 926 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 FOXRED1Q96CU9 486 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 TRIM44Q96DX7 344 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 NAP1L5Q96NT1 182 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 POLR3BQ9NW08 1133 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 STAP2Q9UGK3 403 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 DDX49Q9Y6V7 483 aaKnown RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 CEMIPQ8WUJ3 1361 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 MAP3K5Q99683 1374 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 RPAP1Q9BWH6 1393 aaPredicted RBP2.95□□□□□ -1.94
SPG11-223ENST00000560858 COL18A1P39060 1754 aa2.95□□□□□ -1.94
SPG11-223ENST00000560858 ACEP12821 1306 aa2.94□□□□□ -1.94
SPG11-223ENST00000560858 RAD50Q92878 1312 aa2.94□□□□□ -1.94
SPG11-223ENST00000560858 USP42Q9H9J4 1324 aaKnown RBP2.94□□□□□ -1.94
SPG11-223ENST00000560858 SETD1BQ9UPS6 1966 aaKnown RBP2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms