RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 XYLBO75191 536 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 BMP15O95972 392 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 CXCL8P10145 99 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 MARCKSP29966 332 aaPredicted RBP11.16□□□□□ -0.62
LDLR-214ENST00000560628 RPL9P32969 192 aaKnown RBP11.16□□□□□ -0.62
LDLR-214ENST00000560628 LONP1P36776 959 aaKnown RBP11.16□□□□□ -0.62
LDLR-214ENST00000560628 TNFSF9P41273 254 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 LIG4P49917 911 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 CLCN5P51795 746 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 NCKAP1LP55160 1127 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 MCL1Q07820 350 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 UVSSAQ2YD98 709 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 ZBTB41Q5SVQ8 909 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 FAM173BQ6P4H8 233 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 USP49Q70CQ1 688 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 RAD54LQ92698 747 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 EPSTI1Q96J88 318 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 DNMT3BQ9UBC3 853 aaKnown RBP11.16□□□□□ -0.62
LDLR-214ENST00000560628 TUBGCP4Q9UGJ1 667 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 CDH7Q9ULB5 785 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 CA14Q9ULX7 337 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 TBX20Q9UMR3 447 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 DOCK6Q96HP0 2047 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 TRIP11Q15643 1979 aa11.16□□□□□ -0.62
LDLR-214ENST00000560628 MTCL1Q9Y4B5 1905 aaKnown RBP11.15□□□□□ -0.62
LDLR-214ENST00000560628 DENND4AQ7Z401 1863 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 KRBA1A5PL33 1030 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 LACTBL1A8MY62 500 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 ANHXE9PGG2 379 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 H0YCG3 227 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 K7ENM7 598 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 GALR2O43603 387 aaPredicted RBP11.15□□□□□ -0.62
LDLR-214ENST00000560628 CLTAP09496 248 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 NMT1P30419 496 aaKnown RBP11.15□□□□□ -0.62
LDLR-214ENST00000560628 HOXA9P31269 272 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 ELF1P32519 619 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 MCM4P33991 863 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 DDIT3P35638 169 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 GUCY2FP51841 1108 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 ROR1Q01973 937 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 CEBPZQ03701 1054 aaKnown RBP11.15□□□□□ -0.62
LDLR-214ENST00000560628 HTR4Q13639 388 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 CWF19L1Q69YN2 538 aaKnown RBP11.15□□□□□ -0.62
LDLR-214ENST00000560628 PARM1Q6UWI2 310 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 ZNF461Q8TAF7 563 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 ING5Q8WYH8 240 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 FGF13Q92913 245 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 NXPE3Q969Y0 559 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 FAM212AQ96EL1 285 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 KIF12Q96FN5 646 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 PARVGQ9HBI0 331 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 WNT16Q9UBV4 365 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 ODF2LQ9ULJ1 636 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 NUMBLQ9Y6R0 609 aa11.15□□□□□ -0.62
LDLR-214ENST00000560628 VWA8A3KMH1 1905 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 TTC26A0AVF1 554 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 WDR27A2RRH5 827 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 H7C4K7 107 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 PRRG1O14668 218 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 HNRNPDLO14979 420 aaKnown RBP11.14□□□□□ -0.63
LDLR-214ENST00000560628 SYN3O14994 580 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 TRAK2O60296 914 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 TBC1D4O60343 1298 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 SEC24AO95486 1093 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 SRFP11831 508 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 PDCP20941 246 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 SYT1P21579 422 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 NUBP1P53384 320 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 GPC5P78333 572 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 MRPL58Q14197 206 aaKnown RBP11.14□□□□□ -0.63
LDLR-214ENST00000560628 PTPAQ15257 358 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 CTXN3Q4LDR2 81 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 PABPC1LQ4VXU2 614 aaKnown RBP11.14□□□□□ -0.63
LDLR-214ENST00000560628 ZC2HC1CQ53FD0 456 aaPredicted RBP11.14□□□□□ -0.63
LDLR-214ENST00000560628 SLC8B1Q6J4K2 584 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 DYMQ7RTS9 669 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 GPR152Q8TDT2 470 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 DDX12PQ92771 950 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 FGF14Q92915 247 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 SUSD3Q96L08 255 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 CLIC6Q96NY7 704 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 CCSER1Q9C0I3 900 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 PLEKHA5Q9HAU0 1116 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 CYP4F11Q9HBI6 524 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 FBXL5Q9UKA1 691 aa11.14□□□□□ -0.63
LDLR-214ENST00000560628 TIMM13Q9Y5L4 95 aaPredicted RBP11.14□□□□□ -0.63
LDLR-214ENST00000560628 WDFY4Q6ZS81 3184 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 KMT2EQ8IZD2 1858 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 TISP43B9A030 160 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 ANKRD63C9JTQ0 380 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 TULP1O00294 542 aaPredicted RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 OGTO15294 1046 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 TBCAO75347 108 aaKnown RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 ABLIM3O94929 683 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 RHOP08100 348 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 AOC1P19801 751 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 RFX1P22670 979 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 ZNF131P52739 623 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 RESTQ13127 1097 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 ZBTB6Q15916 424 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms