RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CBWD2Q8IUF1 395 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 MRPL43Q8N983 215 aaKnown RBP14.09□□□□□ -0.15
NEDD8-208ENST00000560427 CACTINQ8WUQ7 758 aaKnown RBP14.09□□□□□ -0.15
NEDD8-208ENST00000560427 C18orf25Q96B23 403 aaPredicted RBP14.09□□□□□ -0.15
NEDD8-208ENST00000560427 FAM212AQ96EL1 285 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 PAAF1Q9BRP4 392 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 VN1R3Q9BXE9 311 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 GOLGA2P5Q9HBQ8 144 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.09□□□□□ -0.151e-6■■■□□ 15.3
NEDD8-208ENST00000560427 MRPL17Q9NRX2 175 aaKnown RBP14.09□□□□□ -0.15
NEDD8-208ENST00000560427 CHST7Q9NS84 486 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 KIAA1468Q9P260 1216 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 TUBGCP4Q9UGJ1 667 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 MAN1B1Q9UKM7 699 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 COG5Q9UP83 839 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 MYO9BQ13459 2157 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 C2orf71A6NGG8 1288 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 PSMA7O14818 248 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 MAPK13O15264 365 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 C1RP00736 705 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 AARSP49588 968 aaKnown RBP eCLIP14.08□□□□□ -0.16
NEDD8-208ENST00000560427 LRRC63Q05C16 580 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 ENPEPQ07075 957 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 SPAG1Q07617 926 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 PSMD6Q15008 389 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 PTPN14Q15678 1187 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 KIAA1841Q6NSI8 718 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 USP37Q86T82 979 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 WDR49Q8IV35 697 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 EFCAB13Q8IY85 973 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 ADSSL1Q8N142 457 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 NOC3LQ8WTT2 800 aaKnown RBP14.08□□□□□ -0.16
NEDD8-208ENST00000560427 ERCC4Q92889 916 aaPredicted RBP14.08□□□□□ -0.16
NEDD8-208ENST00000560427 DHTKD1Q96HY7 919 aaPredicted RBP14.08□□□□□ -0.16
NEDD8-208ENST00000560427 TSG101Q99816 390 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 NUP62CLQ9H1M0 184 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 ITGA11Q9UKX5 1188 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 FRMD4BQ9Y2L6 1034 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 NUB1Q9Y5A7 615 aa14.08□□□□□ -0.16
NEDD8-208ENST00000560427 PRRC2BQ5JSZ5 2229 aaKnown RBP14.08□□□□□ -0.16
NEDD8-208ENST00000560427 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.07□□□□□ -0.16
NEDD8-208ENST00000560427 ARHGEF37A1IGU5 675 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 F8W810 466 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 SYN3O14994 580 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 CXCL14O95715 111 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 TMEM191BP0C7N4 346 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 SRGAP2BP0DMP2 458 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 FGFR3P22607 806 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 NR2F2P24468 414 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 PNPLA4P41247 253 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 PRCPP42785 496 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 CYP24A1Q07973 514 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 DUSP6Q16828 381 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 C9orf57Q5W0N0 161 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 CENPPQ6IPU0 288 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 PPFIBP1Q86W92 1011 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 SMYD4Q8IYR2 804 aaPredicted RBP14.07□□□□□ -0.16
NEDD8-208ENST00000560427 EFHBQ8N7U6 833 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 C3orf58Q8NDZ4 430 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 ZSWIM2Q8NEG5 633 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 HASPINQ8TF76 798 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 PIK3R5Q8WYR1 880 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 PABPC5Q96DU9 382 aaKnown RBP14.07□□□□□ -0.16
NEDD8-208ENST00000560427 ANKRD36BP1Q96IX9 119 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 MFSD14AQ96MC6 490 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 ZNF560Q96MR9 790 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 FNBP1Q96RU3 617 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 TTPALQ9BTX7 342 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 EMILIN2Q9BXX0 1053 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 GPR62Q9BZJ7 368 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 TLE6Q9H808 572 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 PDE11AQ9HCR9 933 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 CACNG4Q9UBN1 327 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 MAPK8IP1Q9UQF2 711 aa14.07□□□□□ -0.16
NEDD8-208ENST00000560427 ATG2AQ2TAZ0 1938 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 ANO9A1A5B4 782 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 HIDE1A8MVS5 230 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 PIRO00625 290 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 LILRB3O75022 631 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 CSPG5O95196 566 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 MCM4P33991 863 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 AP3M2P53677 418 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 WNT7BP56706 349 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 TFAMQ00059 246 aaKnown RBP14.06□□□□□ -0.16
NEDD8-208ENST00000560427 HYAL1Q12794 435 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 SKIV2LQ15477 1246 aaKnown RBP14.06□□□□□ -0.16
NEDD8-208ENST00000560427 CCDC85BQ15834 202 aaPredicted RBP14.06□□□□□ -0.16
NEDD8-208ENST00000560427 CAMK4Q16566 473 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 DUOXA2Q1HG44 320 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 FAM171A1Q5VUB5 890 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 KIAA0319Q5VV43 1072 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 CD300LGQ6UXG3 332 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 LRRC52Q8N7C0 313 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 RABGGTAQ92696 567 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 SUSD3Q96L08 255 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 CGRRF1Q99675 332 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 MKNK1Q9BUB5 465 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 RXFP1Q9HBX9 757 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 INTS13Q9NVM9 706 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 DPP3Q9NY33 737 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms