RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 FGF18O76093 207 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 RB1P06400 928 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 DLATP10515 647 aaKnown RBP23.59■■□□□ 1.37
SNX1-210ENST00000560260 CYP3A5P20815 502 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 LRPAP1P30533 357 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 PSMC2P35998 433 aaKnown RBP23.59■■□□□ 1.37
SNX1-210ENST00000560260 ALDH7A1P49419 539 aaKnown RBP23.59■■□□□ 1.37
SNX1-210ENST00000560260 HSP90AA2PQ14568 343 aaPredicted RBP23.59■■□□□ 1.37
SNX1-210ENST00000560260 UPP1Q16831 310 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 GPR153Q6NV75 609 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 PARD3BQ8TEW8 1205 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 HASPINQ8TF76 798 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 IGSF21Q96ID5 467 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 TSPAN18Q96SJ8 248 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 MKNK1Q9BUB5 465 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 MTMR12Q9C0I1 747 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 PRDM12Q9H4Q4 367 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 INTS13Q9NVM9 706 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 ANO10Q9NW15 660 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 SPG21Q9NZD8 308 aa23.59■■□□□ 1.37
SNX1-210ENST00000560260 H3BNC9 293 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 PODXLO00592 558 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 GRM6O15303 877 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 SLC16A3O15427 465 aaKnown RBP23.58■■□□□ 1.36
SNX1-210ENST00000560260 ALDH2P05091 517 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 DNAJB1P25685 340 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 TFAMQ00059 246 aaKnown RBP23.58■■□□□ 1.36
SNX1-210ENST00000560260 ZSCAN23Q3MJ62 389 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 WDR49Q8IV35 697 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 CSGALNACT2Q8N6G5 542 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 C1orf127Q8N9H9 656 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 BEST2Q8NFU1 509 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 CXorf38Q8TB03 319 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 ZNF516Q92618 1163 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 CEP63Q96MT8 703 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 UROC1Q96N76 676 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 C11orf84Q9BUA3 381 aaPredicted RBP23.58■■□□□ 1.36
SNX1-210ENST00000560260 DNAJC25Q9H1X3 360 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 ALG13Q9NP73 1137 aaKnown RBP23.58■■□□□ 1.36
SNX1-210ENST00000560260 DACH1Q9UI36 760 aa23.58■■□□□ 1.36
SNX1-210ENST00000560260 EFEMP2O95967 443 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 TRIM49P0CI25 452 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 TRIM49CP0CI26 452 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 ERCC5P28715 1186 aaPredicted RBP23.57■■□□□ 1.36
SNX1-210ENST00000560260 PPM1AP35813 382 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 PLCB3Q01970 1234 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 GPM6BQ13491 265 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 SURF1Q15526 300 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 NT5DC4Q86YG4 428 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 SPPL3Q8TCT6 385 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 TMC2Q8TDI7 906 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 SIX4Q9UIU6 781 aa23.57■■□□□ 1.36
SNX1-210ENST00000560260 TMEM189-UBE2V1I3L0A0 370 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 XPOTO43592 962 aaKnown RBP23.56■■□□□ 1.36
SNX1-210ENST00000560260 EPB41P11171 864 aaKnown RBP23.56■■□□□ 1.36
SNX1-210ENST00000560260 MCCD1P59942 119 aaPredicted RBP23.56■■□□□ 1.36
SNX1-210ENST00000560260 CLDN10P78369 228 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 BFSP1Q12934 665 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 CAMK1Q14012 370 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 C9orf57Q5W0N0 161 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 FNBP1Q96RU3 617 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 SRRTQ9BXP5 876 aaKnown RBP23.56■■□□□ 1.36
SNX1-210ENST00000560260 DPP3Q9NY33 737 aa23.56■■□□□ 1.36
SNX1-210ENST00000560260 ANO9A1A5B4 782 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 TMEM191BP0C7N4 346 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 VAMP7P51809 220 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 INTS8Q75QN2 995 aaKnown RBP23.55■■□□□ 1.36
SNX1-210ENST00000560260 FILIP1Q7Z7B0 1213 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 IRF2BP1Q8IU81 584 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 RNF168Q8IYW5 571 aaPredicted RBP23.55■■□□□ 1.36
SNX1-210ENST00000560260 TMEM169Q96HH4 297 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 COLEC11Q9BWP8 271 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 ADAM28Q9UKQ2 775 aa23.55■■□□□ 1.36
SNX1-210ENST00000560260 SCN1AP35498 2009 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 PIRO00625 290 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 CSPG5O95196 566 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 LETM1O95202 739 aaPredicted RBP23.54■■□□□ 1.36
SNX1-210ENST00000560260 TNNI1P19237 187 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 RPL9P32969 192 aaKnown RBP23.54■■□□□ 1.36
SNX1-210ENST00000560260 BRCC3P46736 316 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 ADGRE1Q14246 886 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 ANO6Q4KMQ2 910 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 CT47A1Q5JQC4 288 aaPredicted RBP23.54■■□□□ 1.36
SNX1-210ENST00000560260 DCLRE1AQ6PJP8 1040 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 POF1BQ8WVV4 589 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 DDX27Q96GQ7 796 aaKnown RBP23.54■■□□□ 1.36
SNX1-210ENST00000560260 GPR62Q9BZJ7 368 aa23.54■■□□□ 1.36
SNX1-210ENST00000560260 I3L4J1 428 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 B3GAT3O94766 335 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 ITGB3P05106 788 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 POLR2BP30876 1174 aaKnown RBP23.53■■□□□ 1.36
SNX1-210ENST00000560260 PPP3CAQ08209 521 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 DUOXA2Q1HG44 320 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 FUT10Q6P4F1 479 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 TAS1R1Q7RTX1 841 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 TRAPPC11Q7Z392 1133 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 DEFB123Q8N688 67 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 ANKRD36BP1Q96IX9 119 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 GUCD1Q96NT3 240 aa23.53■■□□□ 1.36
SNX1-210ENST00000560260 PCDHGC5Q9Y5F6 944 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms