RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MIOSQ9NXC5 875 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 DPP3Q9NY33 737 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 ITGA11Q9UKX5 1188 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 COL4A6Q14031 1691 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 PTGESO14684 152 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 P4HA2O15460 535 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 TRAPPC3O43617 180 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 LRPAP1P30533 357 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 OR1G1P47890 313 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 GATMP50440 423 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 KRT17Q04695 432 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 ELAVL2Q12926 359 aaKnown RBP9.97□□□□□ -0.81
LDLR-210ENST00000559340 MYO1EQ12965 1108 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 BIRC3Q13489 604 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 IQCB1Q15051 598 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 TCP11X2Q5H9J9 407 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 DCAF17Q5H9S7 520 aaPredicted RBP9.97□□□□□ -0.81
LDLR-210ENST00000559340 GLRA4Q5JXX5 417 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 KRT39Q6A163 491 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 COLGALT2Q8IYK4 626 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 GSTCDQ8NEC7 633 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 EEF2KMTQ96G04 330 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 ZNF560Q96MR9 790 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 TGS1Q96RS0 853 aaKnown RBP9.97□□□□□ -0.81
LDLR-210ENST00000559340 PLVAPQ9BX97 442 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 IMPG2Q9BZV3 1241 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 NRDE2Q9H7Z3 1164 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 SLC28A3Q9HAS3 691 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 RC3H2Q9HBD1 1191 aaKnown RBP9.97□□□□□ -0.81
LDLR-210ENST00000559340 TMEM8AQ9HCN3 771 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 SAMSN1Q9NSI8 373 aaKnown RBP9.97□□□□□ -0.81
LDLR-210ENST00000559340 SPG21Q9NZD8 308 aa9.97□□□□□ -0.81
LDLR-210ENST00000559340 PUF60Q9UHX1 559 aaKnown RBP9.97□□□□□ -0.81
LDLR-210ENST00000559340 LAMA3Q16787 3333 aa9.96□□□□□ -0.81
LDLR-210ENST00000559340 MYH10P35580 1976 aa9.96□□□□□ -0.81
LDLR-210ENST00000559340 LRRIQ3A6PVS8 624 aaPredicted RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 GRXCR1A8MXD5 290 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 PES1O00541 588 aaKnown RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 PMM2O15305 246 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 ZC3H11AO75152 810 aaKnown RBP eCLIP9.96□□□□□ -0.82
LDLR-210ENST00000559340 TADA2AO75478 443 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 AFPP02771 609 aaKnown RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 TPM3P06753 285 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 GALTP07902 379 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 NFICP08651 508 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 KRT19P08727 400 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 ATICP31939 592 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 RABGGTBP53611 331 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 BCAR1P56945 870 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 DSC1Q08554 894 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 KCNH2Q12809 1159 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 MAPK8IP2Q13387 824 aaPredicted RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 NCAPHQ15003 741 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 CDKAL1Q5VV42 579 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 KCNT2Q6UVM3 1135 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 TRAPPC11Q7Z392 1133 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 TMCO2Q7Z6W1 182 aaPredicted RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 TRIM59Q8IWR1 403 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 DHX40Q8IX18 779 aaKnown RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 EFCAB13Q8IY85 973 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 LRRC52Q8N7C0 313 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 TAF4BQ92750 862 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 CLP1Q92989 425 aaKnown RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 TMEM169Q96HH4 297 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 ZMAT2Q96NC0 199 aaKnown RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 MED15Q96RN5 788 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 TUBGCP2Q9BSJ2 902 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 DNAI2Q9GZS0 605 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 CWH43Q9H720 699 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 NUB1Q9Y5A7 615 aa9.96□□□□□ -0.82
LDLR-210ENST00000559340 MRPL42Q9Y6G3 142 aaKnown RBP9.96□□□□□ -0.82
LDLR-210ENST00000559340 TMEM265A0A087WTH1 108 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 CASTOR2A6NHX0 329 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 LRRC10BA6NIK2 292 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 TMEM189-UBE2V1I3L0A0 370 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 PODXLO00592 558 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 PIRO00625 290 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 NRP1O14786 923 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 B3GAT3O94766 335 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 DDHD2O94830 711 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 CLSTN1O94985 981 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 C4BPAP04003 597 aaKnown RBP9.95□□□□□ -0.82
LDLR-210ENST00000559340 P4HA1P13674 534 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 BMPR1AP36894 532 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 GCLMP48507 274 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 FMO5P49326 533 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 TAF6P49848 677 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 MXI1P50539 228 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 ERVK-21P61565 698 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 UPP1Q16831 310 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 SGSM1Q2NKQ1 1148 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 ZACNQ401N2 412 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 SV2CQ496J9 727 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 VWA3BQ502W6 1294 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 WDR44Q5JSH3 913 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 FKBP15Q5T1M5 1219 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 ZNF697Q5TEC3 545 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 C9orf57Q5W0N0 161 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 SV2AQ7L0J3 742 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 ZNF280BQ86YH2 543 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms