RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GRIK3Q13003 919 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SNX30Q5VWJ9 437 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SPOPLQ6IQ16 392 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 PRR11Q96HE9 360 aaPredicted RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 VCXQ9H320 206 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 CYP39A1Q9NYL5 469 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 HSPBP1Q9NZL4 362 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SCOCQ9UIL1 159 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 CORO1CQ9ULV4 474 aaPredicted RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 TPBGLP0DKB5 382 aa12.02□□□□□ -0.48
LDLR-208ENST00000558518 CLK2P49760 499 aaKnown RBP12.02□□□□□ -0.48
LDLR-208ENST00000558518 THOC5Q13769 683 aaKnown RBP12.02□□□□□ -0.48
LDLR-208ENST00000558518 LRRC6Q86X45 466 aa12.02□□□□□ -0.48
LDLR-208ENST00000558518 RFWD2Q8NHY2 731 aa12.02□□□□□ -0.48
LDLR-208ENST00000558518 TAS1R2Q8TE23 839 aa12.02□□□□□ -0.48
LDLR-208ENST00000558518 TRAIPQ9BWF2 469 aa12.02□□□□□ -0.48
LDLR-208ENST00000558518 DOCK2Q92608 1830 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 TROVE2P10155 538 aaKnown RBP eCLIP12.02□□□□□ -0.49
LDLR-208ENST00000558518 ESRRAP11474 423 aaPredicted RBP12.02□□□□□ -0.49
LDLR-208ENST00000558518 MYCLP12524 364 aaPredicted RBP12.02□□□□□ -0.49
LDLR-208ENST00000558518 CYP11B1P15538 503 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 TNNI1P19237 187 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 NSFP46459 744 aaKnown RBP12.02□□□□□ -0.49
LDLR-208ENST00000558518 SPIRE1Q08AE8 756 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 GALNTL6Q49A17 601 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 PLA2G4FQ68DD2 849 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 ANKLE1Q8NAG6 615 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 SCG3Q8WXD2 468 aaKnown RBP12.02□□□□□ -0.49
LDLR-208ENST00000558518 POMGNT1Q8WZA1 660 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 SEMA4DQ92854 862 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.02□□□□□ -0.494e-7■■□□□ 11.6
LDLR-208ENST00000558518 NMRK1Q9NWW6 199 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 ALS2Q96Q42 1657 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 ZMYM2Q9UBW7 1377 aa12.02□□□□□ -0.49
LDLR-208ENST00000558518 ENO1P06733 434 aaKnown RBP12.01□□□□□ -0.49
LDLR-208ENST00000558518 MFAP3P55082 362 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 GAD2Q05329 585 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 CYFIP1Q7L576 1253 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 MIER3Q7Z3K6 550 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 KREMEN1Q96MU8 473 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 NAP1L4Q99733 375 aaKnown RBP12.01□□□□□ -0.49
LDLR-208ENST00000558518 WDR18Q9BV38 432 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 SMYD3Q9H7B4 428 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 LARSQ9P2J5 1176 aaKnown RBP12.01□□□□□ -0.49
LDLR-208ENST00000558518 NARFQ9UHQ1 456 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 UTRNP46939 3433 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 MYH11P35749 1972 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 PLCH1Q4KWH8 1693 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 OPHN1O60890 802 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 HAUS5O94927 633 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 NDUFB10O96000 172 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 CNGA1P29973 690 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 TM4SF1P30408 202 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 DRG2P55039 364 aaKnown RBP12.01□□□□□ -0.49
LDLR-208ENST00000558518 FMO1Q01740 532 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 SMTNL2Q2TAL5 461 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 PPP1R15BQ5SWA1 713 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 SYDE2Q5VT97 1194 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 TTC7BQ86TV6 843 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 XXYLT1Q8NBI6 393 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 ATL2Q8NHH9 583 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 CCDC124Q96CT7 223 aaKnown RBP12.01□□□□□ -0.49
LDLR-208ENST00000558518 CLPTM1LQ96KA5 538 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 RILPQ96NA2 401 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 NT5C1BQ96P26 610 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 TMEM121Q9BTD3 319 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 KIAA1586Q9HCI6 787 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 PCDHA3Q9Y5H8 950 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 IKBKGQ9Y6K9 419 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 ARHGAP42A6NI28 874 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 DCTN3O75935 186 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 MAP3K6O95382 1288 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 CYP3A4P08684 503 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 MARK3P27448 753 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 SERPINB3P29508 390 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 SGSM1Q2NKQ1 1148 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 HYIQ5T013 277 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 CDC42EP5Q6NZY7 148 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 CCDC62Q6P9F0 684 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 FAM196AQ6ZSG2 479 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 C1orf186Q6ZWK4 172 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 FGD4Q96M96 766 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 ATF5Q9Y2D1 282 aaPredicted RBP12.01□□□□□ -0.49
LDLR-208ENST00000558518 WASF2Q9Y6W5 498 aa12.01□□□□□ -0.49
LDLR-208ENST00000558518 DDTLA6NHG4 134 aaPredicted RBP12□□□□□ -0.49
LDLR-208ENST00000558518 F5H423 210 aaPredicted RBP12□□□□□ -0.49
LDLR-208ENST00000558518 PECAM1P16284 738 aaPredicted RBP12□□□□□ -0.49
LDLR-208ENST00000558518 ECE1P42892 770 aa12□□□□□ -0.49
LDLR-208ENST00000558518 NRLP54845 237 aa12□□□□□ -0.49
LDLR-208ENST00000558518 TRAPPC3LQ5T215 181 aa12□□□□□ -0.49
LDLR-208ENST00000558518 OTOAQ7RTW8 1153 aa12□□□□□ -0.49
LDLR-208ENST00000558518 AGGF1Q8N302 714 aaeCLIP12□□□□□ -0.49
LDLR-208ENST00000558518 GRK7Q8WTQ7 553 aa12□□□□□ -0.49
LDLR-208ENST00000558518 KIFAP3Q92845 792 aa12□□□□□ -0.49
LDLR-208ENST00000558518 NACC1Q96RE7 527 aa12□□□□□ -0.49
LDLR-208ENST00000558518 OSBPL8Q9BZF1 889 aa12□□□□□ -0.49
LDLR-208ENST00000558518 IQCGQ9H095 443 aaKnown RBP12□□□□□ -0.49
LDLR-208ENST00000558518 GRID1Q9ULK0 1009 aa12□□□□□ -0.49
LDLR-208ENST00000558518 AGTPBP1Q9UPW5 1226 aa12□□□□□ -0.49
LDLR-208ENST00000558518 H3BRJ5 948 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms