RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 DCLRE1AQ6PJP8 1040 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 C11orf57Q6ZUT1 292 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-204ENST00000558172 EFCAB13Q8IY85 973 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 COLGALT1Q8NBJ5 622 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 EEF2KMTQ96G04 330 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 BORCS6Q96GS4 357 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 DPP3Q9NY33 737 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 DNAJB4Q9UDY4 337 aa11.33□□□□□ -0.6
LRRC28-204ENST00000558172 R3HCC1Q9Y3T6 440 aaKnown RBP11.33□□□□□ -0.6
LRRC28-204ENST00000558172 LRRIQ3A6PVS8 624 aaPredicted RBP11.32□□□□□ -0.6
LRRC28-204ENST00000558172 TMEM189-UBE2V1I3L0A0 370 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 NFICP08651 508 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 LINC00271P0C7V0 271 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 PRKCSHP14314 528 aaPredicted RBP11.32□□□□□ -0.6
LRRC28-204ENST00000558172 CTNNB1P35222 781 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 SLC11A1P49279 550 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 ZNF165P49910 485 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 WNT7BP56706 349 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 PLCB3Q01970 1234 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 KRT17Q04695 432 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 UPP1Q16831 310 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 EPC2Q52LR7 807 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 HABP4Q5JVS0 413 aaKnown RBP11.32□□□□□ -0.6
LRRC28-204ENST00000558172 GPR153Q6NV75 609 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 LRSAM1Q6UWE0 723 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 SLC39A11Q8N1S5 342 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 PLEKHO2Q8TD55 490 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 C18orf25Q96B23 403 aaPredicted RBP11.32□□□□□ -0.6
LRRC28-204ENST00000558172 TMEM169Q96HH4 297 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 SPG21Q9NZD8 308 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 MAGEC2Q9UBF1 373 aaPredicted RBP11.32□□□□□ -0.6
LRRC28-204ENST00000558172 ITGA11Q9UKX5 1188 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 NFE2L3Q9Y4A8 694 aa11.32□□□□□ -0.6
LRRC28-204ENST00000558172 CASTOR2A6NHX0 329 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 PODXLO00592 558 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 PIRO00625 290 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 TRAPPC3O43617 180 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 B4GALT3O60512 393 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 TADA2AO75478 443 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 EEF1GP26641 437 aaKnown RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 PNPLA4P41247 253 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 CLCNKBP51801 687 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 ZNF445P59923 1031 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 DLG4P78352 724 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 RBP5P82980 135 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 UBE3AQ05086 875 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 SOX4Q06945 474 aaPredicted RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 TCERG1LQ5VWI1 586 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 C9orf57Q5W0N0 161 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 TRAPPC11Q7Z392 1133 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 FBXO22Q8NEZ5 403 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 IGSF21Q96ID5 467 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 CNOT6LQ96LI5 555 aaKnown RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 POP1Q99575 1024 aaKnown RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 C17orf80Q9BSJ5 609 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 C11orf84Q9BUA3 381 aaPredicted RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 GZF1Q9H116 711 aaPredicted RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 ZNF576Q9H609 170 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 GOLGA2P5Q9HBQ8 144 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 HCSTQ9UBK5 93 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 TUBGCP4Q9UGJ1 667 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 PUF60Q9UHX1 559 aaKnown RBP11.31□□□□□ -0.6
LRRC28-204ENST00000558172 LZTS1Q9Y250 596 aa11.31□□□□□ -0.6
LRRC28-204ENST00000558172 LAMA3Q16787 3333 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ANO9A1A5B4 782 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ARHGEF37A1IGU5 675 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 BECN2A8MW95 431 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 NT5C1B-RDH14C9J2C7 533 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 H3BNC9 293 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 PHACTR2O75167 634 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 FGF18O76093 207 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 B3GAT3O94766 335 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ARHGEF15O94989 841 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 C4BPAP04003 597 aaKnown RBP11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ITGB3P05106 788 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 TPM4P67936 248 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ELAVL2Q12926 359 aaKnown RBP11.3□□□□□ -0.6
LRRC28-204ENST00000558172 GPM6BQ13491 265 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 TRPC3Q13507 836 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ZACNQ401N2 412 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 DCAF17Q5H9S7 520 aaPredicted RBP11.3□□□□□ -0.6
LRRC28-204ENST00000558172 C1orf220Q5T0J3 134 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ZNF697Q5TEC3 545 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 LMBRD2Q68DH5 695 aaPredicted RBP11.3□□□□□ -0.6
LRRC28-204ENST00000558172 KRT39Q6A163 491 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 IRF2BP1Q8IU81 584 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 CREBRFQ8IUR6 639 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 TRIM59Q8IWR1 403 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 LRRC52Q8N7C0 313 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 C1orf127Q8N9H9 656 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 KLHL23Q8NBE8 558 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ANKRD20A12PQ8NF67 263 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 OR5B17Q8NGF7 314 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ZNF516Q92618 1163 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 ZNF560Q96MR9 790 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 PAAF1Q9BRP4 392 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 MTMR12Q9C0I1 747 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 TSPY26PQ9H489 355 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 TMEM8AQ9HCN3 771 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 SAMSN1Q9NSI8 373 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms