RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 WNT7AO00755 349 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 MARCH6O60337 910 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 RETP07949 1114 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 KCNA4P22459 653 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 HOXC13P31276 330 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 BRCC3P46736 316 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 CLCNKBP51801 687 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 ROR1Q01973 937 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 GAS6Q14393 721 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 FAM187BQ17R55 369 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 FAM78AQ5JUQ0 283 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 VITQ6UXI7 678 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 MAEAQ7L5Y9 396 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 MAP4K3Q8IVH8 894 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 SLFN12Q8IYM2 578 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 CCDC43Q96MW1 224 aaKnown RBP9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 PPP1R10Q96QC0 940 aaKnown RBP9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 CORO1BQ9BR76 489 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 FZD8Q9H461 694 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 BRD9Q9H8M2 597 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 SEMA4GQ9NTN9 838 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 GDAQ9Y2T3 454 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 BACE2Q9Y5Z0 518 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 HELZP42694 1942 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 GON4LQ3T8J9 2241 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CHURC1-FNTBB4DL54 471 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 MAN2B1O00754 1011 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 N4BP3O15049 544 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 HRO43593 1189 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 LRP3O75074 770 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 MOSPD3O75425 235 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 B3GAT3O94766 335 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 SEC24AO95486 1093 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 LRG1P02750 347 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 PRKCBP05771 671 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CHRNB1P11230 501 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 PSMA5P28066 241 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 GDI1P31150 447 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 FNTBP49356 437 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 RBM25P49756 843 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CCR3P51677 355 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 NRLP54845 237 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 SOX4Q06945 474 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 NR5A1Q13285 461 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 PRPF4BQ13523 1007 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CSRP2Q16527 193 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 UPP1Q16831 310 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 WDR44Q5JSH3 913 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 SLC8B1Q6J4K2 584 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 MAMSTRQ6ZN01 415 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 RUFY3Q7L099 469 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 RTL10Q7L3V2 364 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CELF5Q8N6W0 485 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 FAM3CQ92520 227 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ZNF274Q96GC6 653 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CHAMP1Q96JM3 812 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ZSWIM3Q96MP5 696 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ASB16Q96NS5 453 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 NAP1L4Q99733 375 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 IER2Q9BTL4 223 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 TRMT61BQ9BVS5 477 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CCDC113Q9H0I3 377 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 LMAN1LQ9HAT1 526 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ZSWIM6Q9HCJ5 1215 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ZFP14Q9HCL3 533 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ZNF334Q9HCZ1 680 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 C2orf42Q9NWW7 574 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 INSL5Q9Y5Q6 135 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 PIAS3Q9Y6X2 628 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CEP192Q8TEP8 1941 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 ANAPC1Q9H1A4 1944 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 STK36Q9NRP7 1315 aa9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 TNRC6BQ9UPQ9 1833 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-214ENST00000557507 CACNA1EQ15878 2313 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 LAMA1P25391 3075 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 ASPMQ8IZT6 3477 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 K7ESF4 209 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 ARNTLO00327 626 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 PRRG1O14668 218 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 ABLIM3O94929 683 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 BAG4O95429 457 aaKnown RBP9□□□□□ -0.97
CCDC88C-214ENST00000557507 GJA1P17302 382 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 PTPN2P17706 415 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 PSMC3P17980 439 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 LIG1P18858 919 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 VIPR2P41587 438 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 SCRN1Q12765 414 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 SIM2Q14190 667 aaPredicted RBP9□□□□□ -0.97
CCDC88C-214ENST00000557507 CALCRLQ16602 461 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 TMEM132AQ24JP5 1023 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 Q6ZS52 159 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 ANKS3Q6ZW76 656 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 ZBTB8OSQ8IWT0 167 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 HS6ST3Q8IZP7 471 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 ZNF461Q8TAF7 563 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 IRF7Q92985 503 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 TNFRSF25Q93038 417 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 RSPRY1Q96DX4 576 aa9□□□□□ -0.97
CCDC88C-214ENST00000557507 KIFC3Q9BVG8 833 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms