RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 HYAL1Q12794 435 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 USP41Q3LFD5 358 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 ZNF658Q5TYW1 1059 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-228ENST00000557302 SPATA1Q5VX52 437 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 KIAA1841Q6NSI8 718 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 RBM23Q86U06 439 aaKnown RBP14.74□□□□□ -0.05
SHMT2-228ENST00000557302 CBWD2Q8IUF1 395 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 RNF168Q8IYW5 571 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-228ENST00000557302 MRPL43Q8N983 215 aaKnown RBP14.74□□□□□ -0.05
SHMT2-228ENST00000557302 XXYLT1Q8NBI6 393 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 BEST2Q8NFU1 509 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 AUTS2Q8WXX7 1259 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 GPR62Q9BZJ7 368 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 KCTD10Q9H3F6 313 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 IGFLR1Q9H665 355 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 MRPL17Q9NRX2 175 aaKnown RBP14.74□□□□□ -0.05
SHMT2-228ENST00000557302 MAPK8IP1Q9UQF2 711 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 IRAK3Q9Y616 596 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 REV3LO60673 3130 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 TRIP11Q15643 1979 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 C2orf71A6NGG8 1288 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 TRAPPC3O43617 180 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 EXOC3O60645 756 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 LRPAP1P30533 357 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 PTPN14Q15678 1187 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 SNRNP35Q16560 246 aaKnown RBP14.73□□□□□ -0.05
SHMT2-228ENST00000557302 TAS1R1Q7RTX1 841 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 NT5DC4Q86YG4 428 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 SMYD4Q8IYR2 804 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-228ENST00000557302 C3orf58Q8NDZ4 430 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 FBXL18Q96ME1 805 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 CDCA3Q99618 268 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-228ENST00000557302 LMBRD1Q9NUN5 540 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 SSX2IPQ9Y2D8 614 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 NUB1Q9Y5A7 615 aa14.73□□□□□ -0.05
SHMT2-228ENST00000557302 XIRP2A4UGR9 3374 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 FSD2A1L4K1 749 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 C2CD2LO14523 706 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 PER2O15055 1255 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 CALUO43852 315 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-228ENST00000557302 NR3C1P04150 777 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 GTF2F1P35269 517 aaKnown RBP eCLIP14.72□□□□□ -0.05
SHMT2-228ENST00000557302 GUCY2FP51841 1108 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 WNT7BP56706 349 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 DSG1Q02413 1049 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 SURF1Q15526 300 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 CAMK4Q16566 473 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 DUSP6Q16828 381 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 FAM171A1Q5VUB5 890 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 CD300LGQ6UXG3 332 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 SLC9A9Q8IVB4 645 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.72□□□□□ -0.05
SHMT2-228ENST00000557302 EFCAB13Q8IY85 973 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 GPR65Q8IYL9 337 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 HLA-CQ95604 372 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 PABPC5Q96DU9 382 aaKnown RBP14.72□□□□□ -0.05
SHMT2-228ENST00000557302 B3GALT6Q96L58 329 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 TTPALQ9BTX7 342 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 EMILIN2Q9BXX0 1053 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 PDE11AQ9HCR9 933 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 CHST7Q9NS84 486 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 CLDND1Q9NY35 253 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 MAN1B1Q9UKM7 699 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 COG5Q9UP83 839 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 TRAF3IP3Q9Y228 551 aa14.72□□□□□ -0.05
SHMT2-228ENST00000557302 IGFBP6P24592 240 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 MCM4P33991 863 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 PRCPP42785 496 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 TFAMQ00059 246 aaKnown RBP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 CYP24A1Q07973 514 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 MYBPC2Q14324 1141 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 COL19A1Q14993 1142 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 COBLL1Q53SF7 1204 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 KIAA0319Q5VV43 1072 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 EP400NLQ6ZTU2 488 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 TMEM130Q8N3G9 435 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 EFHBQ8N7U6 833 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 RDH13Q8NBN7 331 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 CACTINQ8WUQ7 758 aaKnown RBP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 TMEM174Q8WUU8 243 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 RIN2Q8WYP3 895 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 UBE2ZQ9H832 354 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 PRDM6Q9NQX0 595 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.71□□□□□ -0.05
SHMT2-228ENST00000557302 DMAC2Q9NW81 257 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 DPP3Q9NY33 737 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 THEGQ9P2T0 379 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 BRWD1Q9NSI6 2320 aa14.71□□□□□ -0.05
SHMT2-228ENST00000557302 ATG2AQ2TAZ0 1938 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 PDCD11Q14690 1871 aaKnown RBP14.7□□□□□ -0.06
SHMT2-228ENST00000557302 I3L4J1 428 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 LILRB3O75022 631 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 TMEM191BP0C7N4 346 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 FGFR3P22607 806 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 BRCC3P46736 316 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 CREMQ03060 361 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 STIM1Q13586 685 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 NFIL3Q16649 462 aa14.7□□□□□ -0.06
SHMT2-228ENST00000557302 RTP2Q5QGT7 225 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms