RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 RABEP1Q15276 862 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 PCBP1Q15365 356 aaKnown RBP eCLIP10.31□□□□□ -0.76
SYNE2-224ENST00000557024 UVSSAQ2YD98 709 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 ADCK5Q3MIX3 580 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 PDXDC1Q6P996 788 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 UNQ6494/PRO21346Q6UXR6 183 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 LONP2Q86WA8 852 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 C12orf50Q8NA57 414 aaPredicted RBP10.31□□□□□ -0.76
SYNE2-224ENST00000557024 CCDC148Q8NFR7 591 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 TCEAL4Q96EI5 215 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 SLKQ9H2G2 1235 aaPredicted RBP10.31□□□□□ -0.76
SYNE2-224ENST00000557024 ZFP14Q9HCL3 533 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 ZNF334Q9HCZ1 680 aaPredicted RBP10.31□□□□□ -0.76
SYNE2-224ENST00000557024 CYP3A7-CYP3A51PA0A087WV96 503 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 K7ESF4 209 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 ZBTB39O15060 712 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 AXIN1O15169 862 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 CYP3A7P24462 503 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 IGFBP6P24592 240 aaPredicted RBP10.3□□□□□ -0.76
SYNE2-224ENST00000557024 CCNE1P24864 410 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 HOXC13P31276 330 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 YWHABP31946 246 aaKnown RBP10.3□□□□□ -0.76
SYNE2-224ENST00000557024 CNR2P34972 360 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 NEK4P51957 841 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 NLRP5P59047 1200 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 XKR9Q5GH70 373 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 STPG1Q5TH74 334 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 SLC27A1Q6PCB7 646 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 VITQ6UXI7 678 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 Q6ZS52 159 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 MAP4K3Q8IVH8 894 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 SPEM1Q8N4L4 309 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 IRF7Q92985 503 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 KCNK17Q96T54 332 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 MTRQ99707 1265 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 CORO1BQ9BR76 489 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 TM6SF1Q9BZW5 370 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 CXCL16Q9H2A7 254 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 ARRDC1-AS1Q9H2J1 176 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 RBM12Q9NTZ6 932 aaKnown RBP10.3□□□□□ -0.76
SYNE2-224ENST00000557024 PDRG1Q9NUG6 133 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 DDX25Q9UHL0 483 aaKnown RBP10.3□□□□□ -0.76
SYNE2-224ENST00000557024 VAV3Q9UKW4 847 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 PPME1Q9Y570 386 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 CDY1Q9Y6F8 540 aa10.3□□□□□ -0.76
SYNE2-224ENST00000557024 ZMYM2Q9UBW7 1377 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PTGESO14684 152 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 SLC37A4O43826 429 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 DKC1O60832 514 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 KCNK5O95279 499 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 LRG1P02750 347 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 P4HBP07237 508 aaKnown RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PTPN2P17706 415 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 ANP32AP39687 249 aaKnown RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 VIPR2P41587 438 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 ELAVL2Q12926 359 aaKnown RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PPP2R5CQ13362 524 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 CAPSQ13938 189 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 TFDP1Q14186 410 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 MXD4Q14582 209 aaPredicted RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PRSS36Q5K4E3 855 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PSAPL1Q6NUJ1 521 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 NUDT18Q6ZVK8 323 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 RUFY3Q7L099 469 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 ASAP3Q8TDY4 903 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 PCMTD1Q96MG8 357 aaPredicted RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 ZSWIM3Q96MP5 696 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 ASB16Q96NS5 453 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 LXNQ9BS40 222 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 SLC26A6Q9BXS9 759 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 AVENQ9NQS1 362 aaPredicted RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 XPNPEP1Q9NQW7 623 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 C2orf42Q9NWW7 574 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 RGL1Q9NZL6 768 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 MTRRQ9UBK8 725 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 DOCK6Q96HP0 2047 aa10.29□□□□□ -0.76
SYNE2-224ENST00000557024 CNOT1A5YKK6 2376 aaKnown RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 FASNP49327 2511 aaKnown RBP10.29□□□□□ -0.76
SYNE2-224ENST00000557024 ASPMQ8IZT6 3477 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 IGF2RP11717 2491 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 PKD1L2Q7Z442 2459 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 A0A1B0GUA9 196 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 WDR27A2RRH5 827 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 RCCD1A6NED2 376 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 I3L4J1 428 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 PRRG1O14668 218 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 ZNF263O14978 683 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 ZNF806P0C7X5 589 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 CPA1P15085 419 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 PSMC3P17980 439 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 SPINK2P20155 84 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 FGFR3P22607 806 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 RPS6KB1P23443 525 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 TKTP29401 623 aaKnown RBP10.28□□□□□ -0.76
SYNE2-224ENST00000557024 CCR2P41597 374 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 LRRC32Q14392 662 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 PROX2Q3B8N5 592 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 Q6ZUG5 572 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 RTL10Q7L3V2 364 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms