RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 EAPPQ56P03 285 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 AGBL2Q5U5Z8 902 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ACAD10Q6JQN1 1059 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ARHGAP27Q6ZUM4 889 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 MSL3Q8N5Y2 521 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 EMC1Q8N766 993 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PLEKHO2Q8TD55 490 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 BSNDQ8WZ55 320 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 NGRNQ9NPE2 291 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ZNF302Q9NR11 478 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ZNRF3Q9ULT6 936 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 A0A0A6YYK5 440 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 A0A0G2JND7 137 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 CCNE2O96020 404 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 SCTRP47872 440 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ALCAMQ13740 583 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 NCOA4Q13772 614 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 CLUL1Q15846 466 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 PPP6R3Q5H9R7 873 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 MCPH1Q8NEM0 835 aa12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 MRPL47Q9HD33 250 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 R3HDM2Q9Y2K5 976 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 DIS3Q9Y2L1 958 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-211ENST00000556726 ZMYM2Q9UBW7 1377 aa12.9□□□□□ -0.35
CCDC88C-211ENST00000556726 RIPK2O43353 540 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 TRAPPC3O43617 180 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 GH1P01241 217 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ATP11AP98196 1134 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 CNTN2Q02246 1040 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 RHOT1Q8IXI2 618 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 RTKN2Q8IZC4 609 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 MAIP1Q8WWC4 291 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ZBTB10Q96DT7 871 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ECT2Q9H8V3 914 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ABCF3Q9NUQ8 709 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 L3MBTL1Q9Y468 752 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 SHOX2O60902 331 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ALDH3A1P30838 453 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 OVGP1Q12889 678 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 EMC2Q15006 297 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 WDR72Q3MJ13 1102 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ZBTB41Q5SVQ8 909 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 FAXCQ5TGI0 409 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 DUPD1Q68J44 220 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ANO5Q75V66 913 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 CCDC60Q8IWA6 550 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 TTC17Q96AE7 1141 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM167BQ9BTA0 163 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 TMEM121Q9BTD3 319 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 PPP1R12CQ9BZL4 782 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 MTMR12Q9C0I1 747 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ETNK1Q9HBU6 452 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 WDR46O15213 610 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 UBOX5O94941 541 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 PEX19P40855 299 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 IL9RQ01113 521 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ANGEL2Q5VTE6 544 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 CYB5D1Q6P9G0 228 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 KCTD6Q8NC69 237 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 ATL2Q8NHH9 583 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 PYROXD1Q8WU10 500 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 CFAP36Q96G28 342 aa12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 CNOT7Q9UIV1 285 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-211ENST00000556726 CCT8L1PA6NM43 557 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 CHUKO15111 745 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RAP1GAPP47736 663 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 CYP24A1Q07973 514 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 BMT2Q1RMZ1 405 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 TRPM8Q7Z2W7 1104 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 TRAPPC12Q8WVT3 735 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RANBP17Q9H2T7 1088 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 CFHP08603 1231 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 GCLCP48506 637 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 OR6B2Q6IFH4 312 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 ARHGEF18Q6ZSZ5 1173 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 ACTR5Q9H9F9 607 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 PXMP2Q9NR77 195 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 UVRAGQ9P2Y5 699 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 TTLL3Q9Y4R7 772 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 PCDHB2Q9Y5E7 798 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RNF8O76064 485 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 AGTP01019 485 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 TNNC2P02585 160 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 GJB1P08034 283 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RXRBP28702 533 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 SFNP31947 248 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 PCK1P35558 622 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RGS7P49802 495 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RPL7AP62424 266 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 RCN2Q14257 317 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 ZNF699Q32M78 642 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 ZBTB8OSQ8IWT0 167 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 HEXIM2Q96MH2 286 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 KIF9Q9HAQ2 790 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 CYP26B1Q9NR63 512 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 HACL1Q9UJ83 578 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 TRIM33Q9UPN9 1127 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 NEU2Q9Y3R4 380 aa12.88□□□□□ -0.35
CCDC88C-211ENST00000556726 DGAT1O75907 488 aa12.87□□□□□ -0.35
CCDC88C-211ENST00000556726 YARSP54577 528 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms