RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 COG5Q9UP83 839 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 RARAP10276 462 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 COILP38432 576 aaPredicted RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 P3H1Q32P28 736 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 HYIQ5T013 277 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 CCDC60Q8IWA6 550 aaPredicted RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 CNPY4Q8N129 248 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 C1orf131Q8NDD1 294 aaKnown RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 NLRP7Q8WX94 980 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 CHST7Q9NS84 486 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 HOXC10Q9NYD6 342 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 STRCP1A6NGW2 1772 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 HOXA7P31268 230 aaPredicted RBP15.77■□□□□ 0.12
CUX1-215ENST00000556210 ARSEP51690 589 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 TRIM68Q6AZZ1 485 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 ZNF662Q6ZS27 426 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 EPS8L1Q8TE68 723 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 CALR3Q96L12 384 aaKnown RBP15.77■□□□□ 0.12
CUX1-215ENST00000556210 PCDHB18PQ96TA0 734 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 MTMR12Q9C0I1 747 aa15.77■□□□□ 0.12
CUX1-215ENST00000556210 SAE1Q9UBE0 346 aaPredicted RBP15.77■□□□□ 0.12
CUX1-215ENST00000556210 RGL2O15211 777 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 HSPA6P17066 643 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 RGS7P49802 495 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 EIF3BP55884 814 aaKnown RBP15.77■□□□□ 0.11
CUX1-215ENST00000556210 FAM160B1Q5W0V3 765 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 MAIP1Q8WWC4 291 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 SGSM3Q96HU1 749 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 FGFR1OP2Q9NVK5 253 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 XKR3Q5GH77 459 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 TMC3Q7Z5M5 1100 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 EMC1Q8N766 993 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 MIS12Q9H081 205 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 RANBP17Q9H2T7 1088 aaKnown RBP15.77■□□□□ 0.11
CUX1-215ENST00000556210 CTNNAL1Q9UBT7 734 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 DDX20Q9UHI6 824 aaKnown RBP15.77■□□□□ 0.11
CUX1-215ENST00000556210 DCTN4Q9UJW0 460 aa15.77■□□□□ 0.11
CUX1-215ENST00000556210 CCNE2O96020 404 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 GJB1P08034 283 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 PCK1P35558 622 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 PSMC1P62191 440 aaKnown RBP15.76■□□□□ 0.11
CUX1-215ENST00000556210 ADCY2Q08462 1091 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 IQCKQ8N0W5 287 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 KIF2BQ8N4N8 673 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 OSBPL8Q9BZF1 889 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 VWA5AO00534 786 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 BACE1P56817 501 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 CDR2Q01850 454 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 HADHQ16836 314 aaKnown RBP15.76■□□□□ 0.11
CUX1-215ENST00000556210 SUPT20HL1Q3ZLR7 823 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 LRIG3Q6UXM1 1119 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 ANO5Q75V66 913 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 VTI1AQ96AJ9 217 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 ANKRD36BP1Q96IX9 119 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 SPATA33Q96N06 139 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 COL4A1P02462 1669 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 FSBPO95073 299 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 DRP2Q13474 957 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 CLUL1Q15846 466 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 DAW1Q8N136 415 aa15.76■□□□□ 0.11
CUX1-215ENST00000556210 PSPC1Q8WXF1 523 aaKnown RBP15.76■□□□□ 0.11
CUX1-215ENST00000556210 FAM187AA6NFU0 413 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 H0YCG3 227 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 SAT1P21673 171 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 PDIA2Q13087 525 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 DHX34Q14147 1143 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 SWT1Q5T5J6 900 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 DARS2Q6PI48 645 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 CROCCP2Q86T23 111 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 ZNF354CQ86Y25 554 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 RHOT1Q8IXI2 618 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 RBM15Q96T37 977 aaKnown RBP eCLIP15.75■□□□□ 0.111e-11■■■■□ 21.9
CUX1-215ENST00000556210 KCND2Q9NZV8 630 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 PCDHB2Q9Y5E7 798 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 MYH7P12883 1935 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 GRIN2DO15399 1336 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 SUN1O94901 812 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 ZSCAN5DPP0CG00 497 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 RAP1GAPP47736 663 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 CLCN3P51790 818 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 LY6KQ17RY6 165 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 TMEM35BQ8NCS4 154 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 XPO6Q96QU8 1125 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 SMC6Q96SB8 1091 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 COL14A1Q05707 1796 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 TMEM120BA0PK00 339 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 ATP2A2P16615 1042 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 PRKCIP41743 596 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 ZNF667Q5HYK9 610 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 GPAT2Q6NUI2 795 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 LRRC34Q8IZ02 419 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 UBA3Q8TBC4 463 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 PYROXD1Q8WU10 500 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 PRPF31Q8WWY3 499 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 KREMEN1Q96MU8 473 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 PABPC3Q9H361 631 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 RPF1Q9H9Y2 349 aaKnown RBP15.75■□□□□ 0.11
CUX1-215ENST00000556210 SIX2Q9NPC8 291 aa15.75■□□□□ 0.11
CUX1-215ENST00000556210 POLR2BP30876 1174 aaKnown RBP15.74■□□□□ 0.11
CUX1-215ENST00000556210 COBLL1Q53SF7 1204 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms