RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 R3HDM1Q15032 1099 aaKnown RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MFSD5Q6N075 450 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MCF2L2Q86YR7 1114 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MCOLN2Q8IZK6 566 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PSPC1Q8WXF1 523 aaKnown RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PRCCQ92733 491 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PITPNM3Q9BZ71 974 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 AAASQ9NRG9 546 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ADAM22Q9P0K1 906 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ZNF70Q9UC06 446 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 NAALADL1Q9UQQ1 740 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ZBTB12Q9Y330 459 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MYH11P35749 1972 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 CENPFP49454 3210 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 A0A1B0GUA9 196 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 EXOC1LA0A1B0GW35 172 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 NPM3O75607 178 aaKnown RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 GJB6O95452 261 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ADSSP30520 456 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 PIK3CAP42336 1068 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ALDH5A1P51649 535 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 NCALDP61601 193 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 IL9RQ01113 521 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 STRN3Q13033 797 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 SEPT7Q16181 437 aaKnown RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ARHGEF16Q5VV41 709 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 VSTM1Q6UX27 236 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 NLRX1Q86UT6 975 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 C12orf56Q8IXR9 622 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 CYP4X1Q8N118 509 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 TAB3Q8N5C8 712 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 CCDC89Q8N998 374 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 HAUS1Q96CS2 278 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 TBC1D22BQ9NU19 505 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 SLC12A4Q9UP95 1085 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 TRIM33Q9UPN9 1127 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 WDR64B1ANS9 1081 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 LIG4P49917 911 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 COPS2P61201 443 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 SETDB1Q15047 1291 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 BRDTQ58F21 947 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 SPOPLQ6IQ16 392 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ANKRD35Q8N283 1001 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 FBF1Q8TES7 1133 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 RMDN3Q96TC7 470 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 HERPUD2Q9BSE4 406 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 OSBPL8Q9BZF1 889 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ZNF277Q9NRM2 450 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-213ENST00000554805 GABBR1Q9UBS5 961 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ZNF831Q5JPB2 1677 aa10.11□□□□□ -0.79
SYNE2-213ENST00000554805 ATP9AO75110 1047 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 ATP11AP98196 1134 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 CAV1Q03135 178 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 CYP24A1Q07973 514 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 PTK6Q13882 451 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 P3H1Q32P28 736 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 NSMCE1Q8WV22 266 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 FAM151AQ8WW52 585 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 CKAP2Q8WWK9 683 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 RBM15Q96T37 977 aaKnown RBP eCLIP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 ASTN2O75129 1339 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 O00370 1275 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 DHX15O43143 795 aaKnown RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 CDH16O75309 829 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 ICAM1P05362 532 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 CAP2P40123 477 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 GPC3P51654 580 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 SPP2Q13103 211 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 MPP2Q14168 576 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 WLSQ5T9L3 541 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 TMEM270Q6UE05 265 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 PPP1R21Q6ZMI0 780 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 SYDE1Q6ZW31 735 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 RHOT1Q8IXI2 618 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 GPD1LQ8N335 351 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 GBP7Q8N8V2 638 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 C12orf50Q8NA57 414 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 BBOF1Q8ND07 529 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 TMEM161BQ8NDZ6 487 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 AGAP11Q8TF27 550 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 PLCD4Q9BRC7 762 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 CCDC134Q9H6E4 229 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 A8MUI8 341 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 ANP32DO95626 131 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 KRT10P13645 584 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 SLC1A1P43005 524 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 MAGEA4P43358 317 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 RPS6P62753 249 aaKnown RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 MRPS9P82933 396 aaKnown RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 TCEAL1Q15170 157 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 B3GNT9Q6UX72 402 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 KCNV2Q8TDN2 545 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 SYTL5Q8TDW5 730 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 TRIM11Q96F44 468 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 ETNK1Q9HBU6 452 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 SEPT9Q9UHD8 586 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-213ENST00000554805 ADAMTSL1Q8N6G6 1762 aa10.1□□□□□ -0.79
SYNE2-213ENST00000554805 TLR3O15455 904 aaKnown RBP10.09□□□□□ -0.79
SYNE2-213ENST00000554805 DIAPH2O60879 1101 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms