RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 PRUNE2Q8WUY3 3088 aa24.76■■□□□ 1.55
TDP1-206ENST00000553569 I3L4J1 428 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 NCK2O43639 380 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 RPL9P32969 192 aaKnown RBP24.75■■□□□ 1.55
TDP1-206ENST00000553569 BRCC3P46736 316 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 WNT7BP56706 349 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 RBM10P98175 930 aaKnown RBP24.75■■□□□ 1.55
TDP1-206ENST00000553569 POU5F1Q01860 360 aaKnown RBP24.75■■□□□ 1.55
TDP1-206ENST00000553569 ZBTB6Q15916 424 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 USP41Q3LFD5 358 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 FAM171A1Q5VUB5 890 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 LLGL2Q6P1M3 1020 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 CD300LGQ6UXG3 332 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 CEP57Q86XR8 500 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 CBWD2Q8IUF1 395 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 EFHBQ8N7U6 833 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 TSPAN18Q96SJ8 248 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 RMND1Q9NWS8 449 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 DERAQ9Y315 318 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 PCDHA5Q9Y5H7 936 aa24.75■■□□□ 1.55
TDP1-206ENST00000553569 VWA8A3KMH1 1905 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 CYP3A5P20815 502 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 NDUFV1P49821 464 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 SNRPFP62306 86 aaKnown RBP24.74■■□□□ 1.55
TDP1-206ENST00000553569 DSG1Q02413 1049 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 ELAVL2Q12926 359 aaKnown RBP24.74■■□□□ 1.55
TDP1-206ENST00000553569 COL19A1Q14993 1142 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 SPATA1Q5VX52 437 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 EFCAB13Q8IY85 973 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 SMYD4Q8IYR2 804 aaPredicted RBP24.74■■□□□ 1.55
TDP1-206ENST00000553569 RIN2Q8WYP3 895 aaPredicted RBP24.74■■□□□ 1.55
TDP1-206ENST00000553569 CGNQ9P2M7 1197 aaKnown RBP24.74■■□□□ 1.55
TDP1-206ENST00000553569 C2CD2Q9Y426 696 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 NUB1Q9Y5A7 615 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 GTF3C5Q9Y5Q8 519 aaPredicted RBP24.74■■□□□ 1.55
TDP1-206ENST00000553569 IRAK3Q9Y616 596 aa24.74■■□□□ 1.55
TDP1-206ENST00000553569 H3BQ06 376 aaPredicted RBP24.73■■□□□ 1.55
TDP1-206ENST00000553569 CLASP2O75122 1294 aaKnown RBP24.73■■□□□ 1.55
TDP1-206ENST00000553569 TBX10O75333 385 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 KIF20AO95235 890 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 GLP2RO95838 553 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 LRPAP1P30533 357 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 ADAM15Q13444 863 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 CTC1Q2NKJ3 1217 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 RTP2Q5QGT7 225 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 KIAA0319Q5VV43 1072 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 CLEC17AQ6ZS10 378 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 XXYLT1Q8NBI6 393 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 RDH13Q8NBN7 331 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 VN1R2Q8NFZ6 395 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 GOLGA5Q8TBA6 731 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 GBP4Q96PP9 640 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 GSDMAQ96QA5 445 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 TTPALQ9BTX7 342 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 EMILIN2Q9BXX0 1053 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 KCTD10Q9H3F6 313 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 PDE11AQ9HCR9 933 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 CHST7Q9NS84 486 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 SSX2IPQ9Y2D8 614 aa24.73■■□□□ 1.55
TDP1-206ENST00000553569 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.72■■□□□ 1.55
TDP1-206ENST00000553569 ZNF233A6NK53 670 aa24.72■■□□□ 1.55
TDP1-206ENST00000553569 CNPP09543 421 aaKnown RBP24.72■■□□□ 1.55
TDP1-206ENST00000553569 MCM4P33991 863 aa24.72■■□□□ 1.55
TDP1-206ENST00000553569 TFAMQ00059 246 aaKnown RBP24.72■■□□□ 1.55
TDP1-206ENST00000553569 DLX2Q07687 328 aaPredicted RBP24.72■■□□□ 1.55
TDP1-206ENST00000553569 PRSS55Q6UWB4 352 aaPredicted RBP24.72■■□□□ 1.55
TDP1-206ENST00000553569 C12orf56Q8IXR9 622 aa24.72■■□□□ 1.55
TDP1-206ENST00000553569 FAM84AQ96KN4 292 aa24.72■■□□□ 1.55
TDP1-206ENST00000553569 KLHL5Q96PQ7 755 aa24.72■■□□□ 1.55
TDP1-206ENST00000553569 KIAA1586Q9HCI6 787 aa24.72■■□□□ 1.55
TDP1-206ENST00000553569 BARX2Q9UMQ3 279 aaPredicted RBP24.72■■□□□ 1.55
TDP1-206ENST00000553569 FSD2A1L4K1 749 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 PPEF2O14830 753 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 TRAPPC3O43617 180 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 LILRB3O75022 631 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 LTBRP36941 435 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 CLUL1Q15846 466 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 SNRNP35Q16560 246 aaKnown RBP24.71■■□□□ 1.55
TDP1-206ENST00000553569 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.71■■□□□ 1.55
TDP1-206ENST00000553569 ELOA2Q8IYF1 753 aaPredicted RBP24.71■■□□□ 1.55
TDP1-206ENST00000553569 GUF1Q8N442 669 aaKnown RBP24.71■■□□□ 1.55
TDP1-206ENST00000553569 FBXL18Q96ME1 805 aa24.71■■□□□ 1.55
TDP1-206ENST00000553569 EXOC3O60645 756 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 RPL17P18621 184 aaKnown RBP24.7■■□□□ 1.54
TDP1-206ENST00000553569 KLRC2P26717 231 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 TKTP29401 623 aaKnown RBP24.7■■□□□ 1.54
TDP1-206ENST00000553569 MRPS5P82675 430 aaKnown RBP24.7■■□□□ 1.54
TDP1-206ENST00000553569 LMBRD2Q68DH5 695 aaPredicted RBP24.7■■□□□ 1.54
TDP1-206ENST00000553569 ISM2Q6H9L7 571 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 GLYCTKQ8IVS8 523 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 SPATA20Q8TB22 786 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 ATXN2LQ8WWM7 1075 aaKnown RBP24.7■■□□□ 1.54
TDP1-206ENST00000553569 DPP3Q9NY33 737 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 HCFC2Q9Y5Z7 792 aa24.7■■□□□ 1.54
TDP1-206ENST00000553569 PLXNA3P51805 1871 aa24.69■■□□□ 1.54
TDP1-206ENST00000553569 PDXKO00764 312 aa24.69■■□□□ 1.54
TDP1-206ENST00000553569 TEX28O15482 410 aa24.69■■□□□ 1.54
TDP1-206ENST00000553569 CALUO43852 315 aaPredicted RBP24.69■■□□□ 1.54
TDP1-206ENST00000553569 NR3C1P04150 777 aa24.69■■□□□ 1.54
TDP1-206ENST00000553569 SRGAP2BP0DMP2 458 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms