RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 BACE2Q9Y5Z0 518 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 SLC38A8A6NNN8 435 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 B3GAT3O94766 335 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 ABLIM3O94929 683 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 HMGB1P09429 215 aaKnown RBP14.28□□□□□ -0.12
VPS29-211ENST00000553128 SPINK2P20155 84 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 PDIA3P30101 505 aaKnown RBP14.28□□□□□ -0.12
VPS29-211ENST00000553128 PXNP49023 591 aaPredicted RBP14.28□□□□□ -0.12
VPS29-211ENST00000553128 ACAP1Q15027 740 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 UNQ6494/PRO21346Q6UXR6 183 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 MAEAQ7L5Y9 396 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 SDK1Q7Z5N4 2213 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 SKAP1Q86WV1 359 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 GPIHBP1Q8IV16 184 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 ZNF461Q8TAF7 563 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 TTC8Q8TAM2 541 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 JAKMIP1Q96N16 626 aaKnown RBP14.28□□□□□ -0.12
VPS29-211ENST00000553128 KCNJ14Q9UNX9 436 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 LAMA5O15230 3695 aa14.28□□□□□ -0.12
VPS29-211ENST00000553128 NBEAQ8NFP9 2946 aa14.27□□□□□ -0.12
VPS29-211ENST00000553128 LRRIQ4A6NIV6 560 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 TMEM189-UBE2V1I3L0A0 370 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 PRRG1O14668 218 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 GIPC1O14908 333 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 ZNF263O14978 683 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 FOXD2O60548 495 aaPredicted RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 CCNT1O60563 726 aaKnown RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 DGAT1O75907 488 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 PRKCBP05771 671 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 ZNF806P0C7X5 589 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 ARPP19P56211 112 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 EEF1DP3Q658K8 133 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 SLC8B1Q6J4K2 584 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 PSAPL1Q6NUJ1 521 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 PPP4R3CPQ6ZMV5 832 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 PDZD4Q76G19 769 aaPredicted RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 KBTBD6Q86V97 674 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 WDR5BQ86VZ2 330 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 MFSD6LQ8IWD5 586 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 C12orf50Q8NA57 414 aaPredicted RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 ZSCAN18Q8TBC5 510 aaPredicted RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 PPP1R10Q96QC0 940 aaKnown RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 LSM14BQ9BX40 385 aaKnown RBP14.27□□□□□ -0.13
VPS29-211ENST00000553128 AGXT2Q9BYV1 514 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 FZD8Q9H461 694 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 CYP4F11Q9HBI6 524 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 CEP72Q9P209 647 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 GDAQ9Y2T3 454 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 INSL5Q9Y5Q6 135 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 GREB1Q4ZG55 1949 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 AKAP13Q12802 2813 aa14.27□□□□□ -0.13
VPS29-211ENST00000553128 IGF2RP11717 2491 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 DMXL2Q8TDJ6 3036 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 HEPACAM2A8MVW5 462 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 DTNBO60941 627 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 MICAL2O94851 1124 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 EPN2O95208 641 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 TOP3BO95985 862 aaKnown RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 SOX4Q06945 474 aaPredicted RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 SSRP1Q08945 709 aaKnown RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 TEAD2Q15562 447 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 UPP1Q16831 310 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 EARS2Q5JPH6 523 aaKnown RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 CDCA2Q69YH5 1023 aaPredicted RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 PPP4R3AQ6IN85 833 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 TCEAL6Q6IPX3 200 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 PKN3Q6P5Z2 889 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 ANKS3Q6ZW76 656 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 KRT25Q7Z3Z0 450 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 NEK8Q86SG6 692 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 TCEAL8Q8IYN2 117 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 PIGOQ8TEQ8 1089 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 DEPDC1BQ8WUY9 529 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 TCEAL3Q969E4 200 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 EIF2AK1Q9BQI3 630 aaKnown RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 TMEM121BQ9BXQ6 578 aaPredicted RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 PRMT7Q9NVM4 692 aaPredicted RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 WASF3Q9UPY6 502 aa14.26□□□□□ -0.13
VPS29-211ENST00000553128 FASNP49327 2511 aaKnown RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 ANKRD11Q6UB99 2663 aaPredicted RBP14.26□□□□□ -0.13
VPS29-211ENST00000553128 SMG1Q96Q15 3661 aaKnown RBP14.25□□□□□ -0.13
VPS29-211ENST00000553128 FAM205CA6NFA0 338 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 ZNF197O14709 1029 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 EXTL3O43909 919 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 USO1O60763 962 aaKnown RBP14.25□□□□□ -0.13
VPS29-211ENST00000553128 MYL4P12829 197 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 ATF2P15336 505 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 RPS6KB1P23443 525 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 ELF1P32519 619 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 RAP1GAPP47736 663 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 RARRES1P49788 294 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 LRRC32Q14392 662 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 PLA2G2CQ5R387 149 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 BLOC1S2Q6QNY1 142 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 FBXL16Q8N461 479 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 KDF1Q8NAX2 398 aaPredicted RBP14.25□□□□□ -0.13
VPS29-211ENST00000553128 OXER1Q8TDS5 423 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 BSNDQ8WZ55 320 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 KCNB2Q92953 911 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 PRIMPOLQ96LW4 560 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms