RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SPAG1Q07617 926 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 AXDND1Q5T1B0 1012 aaPredicted RBP17.82■□□□□ 0.44
VPS29-207ENST00000549970 GRASPQ7Z6J2 395 aaPredicted RBP17.82■□□□□ 0.44
VPS29-207ENST00000549970 TMEM130Q8N3G9 435 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 RSAD2Q8WXG1 361 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 INTS4Q96HW7 963 aaKnown RBP17.82■□□□□ 0.44
VPS29-207ENST00000549970 CLIC6Q96NY7 704 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 IGSF9Q9P2J2 1179 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 EPS15L1Q9UBC2 864 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 TUBGCP4Q9UGJ1 667 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 FBXO2Q9UK22 296 aaPredicted RBP17.82■□□□□ 0.44
VPS29-207ENST00000549970 DUSP12Q9UNI6 340 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 BACE2Q9Y5Z0 518 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 K7ELQ4 463 aaPredicted RBP17.81■□□□□ 0.44
VPS29-207ENST00000549970 CLTAP09496 248 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 HNRNPA1P09651 372 aaKnown RBP eCLIP17.81■□□□□ 0.44
VPS29-207ENST00000549970 NMT1P30419 496 aaKnown RBP17.81■□□□□ 0.44
VPS29-207ENST00000549970 MCM4P33991 863 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 DDIT3P35638 169 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 NTHL1P78549 312 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 VARS2Q5ST30 1063 aaKnown RBP17.81■□□□□ 0.44
VPS29-207ENST00000549970 KCNN1Q92952 543 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 MFSD1Q9H3U5 465 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.81■□□□□ 0.44
VPS29-207ENST00000549970 CCDC39Q9UFE4 941 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 MTMR6Q9Y217 621 aa17.81■□□□□ 0.44
VPS29-207ENST00000549970 SRPRBQ9Y5M8 271 aaKnown RBP17.81■□□□□ 0.44
VPS29-207ENST00000549970 SYN3O14994 580 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 NARSO43776 548 aaKnown RBP17.8■□□□□ 0.44
VPS29-207ENST00000549970 XYLBO75191 536 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 PIGRP01833 764 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 FSHRP23945 695 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 HOXA9P31269 272 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 ARPP19P56211 112 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 PPP2R3AQ06190 1150 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 ZBTB41Q5SVQ8 909 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 KRI1Q8N9T8 703 aaKnown RBP17.8■□□□□ 0.44
VPS29-207ENST00000549970 ST13P5Q8NFI4 369 aaPredicted RBP17.8■□□□□ 0.44
VPS29-207ENST00000549970 KIF12Q96FN5 646 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 FIZ1Q96SL8 496 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 PRRX2Q99811 253 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 FBXL21Q9UKT6 434 aa17.8■□□□□ 0.44
VPS29-207ENST00000549970 TTC26A0AVF1 554 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 LACTBL1A8MY62 500 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 OGTO15294 1046 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 LAMP2P13473 410 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 SCP2P22307 547 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 TXLNAP40222 546 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 PTPN5P54829 565 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 ROR1Q01973 937 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 TCF15Q12870 199 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 UVSSAQ2YD98 709 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 RRAGBQ5VZM2 374 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 DYMQ7RTS9 669 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 ALYREFQ86V81 257 aaKnown RBP17.79■□□□□ 0.44
VPS29-207ENST00000549970 SUSD3Q96L08 255 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 USP28Q96RU2 1077 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 MSTO1Q9BUK6 570 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 RPF1Q9H9Y2 349 aaKnown RBP17.79■□□□□ 0.44
VPS29-207ENST00000549970 PLEKHA5Q9HAU0 1116 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 HCFC1R1Q9NWW0 138 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 STK17AQ9UEE5 414 aa17.79■□□□□ 0.44
VPS29-207ENST00000549970 WDR27A2RRH5 827 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 H7C4K7 107 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 STX6O43752 255 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 GTF2BQ00403 316 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 ENOX2Q16206 610 aaKnown RBP17.78■□□□□ 0.44
VPS29-207ENST00000549970 KYAT1Q16773 422 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 ZC2HC1CQ53FD0 456 aaPredicted RBP17.78■□□□□ 0.44
VPS29-207ENST00000549970 SLC8B1Q6J4K2 584 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 SLC39A4Q6P5W5 647 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 MAP4K3Q8IVH8 894 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 TMEM105Q8N8V8 129 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 FLCNQ8NFG4 579 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 FAM212AQ96EL1 285 aa17.78■□□□□ 0.44
VPS29-207ENST00000549970 UBQLN1Q9UMX0 589 aaKnown RBP17.78■□□□□ 0.44
VPS29-207ENST00000549970 A0A0B4J269 797 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 FAM189A1O60320 539 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 CFHP08603 1231 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 ELF1P32519 619 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 GUCY2FP51841 1108 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 CTXN3Q4LDR2 81 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 ASTLQ6HA08 431 aaPredicted RBP17.77■□□□□ 0.44
VPS29-207ENST00000549970 SFR1Q86XK3 245 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 SIX5Q8N196 739 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 SLC44A3Q8N4M1 653 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 APPL2Q8NEU8 664 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 ZNF461Q8TAF7 563 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 DDX12PQ92771 950 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 NXPE3Q969Y0 559 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 ZSCAN16Q9H4T2 348 aaPredicted RBP17.77■□□□□ 0.44
VPS29-207ENST00000549970 DNMT3BQ9UBC3 853 aaKnown RBP17.77■□□□□ 0.44
VPS29-207ENST00000549970 FBXL5Q9UKA1 691 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 NUMBLQ9Y6R0 609 aa17.77■□□□□ 0.44
VPS29-207ENST00000549970 TISP43B9A030 160 aa17.76■□□□□ 0.43
VPS29-207ENST00000549970 ANKRD63C9JTQ0 380 aa17.76■□□□□ 0.43
VPS29-207ENST00000549970 PRRG1O14668 218 aa17.76■□□□□ 0.43
VPS29-207ENST00000549970 XPOTO43592 962 aaKnown RBP17.76■□□□□ 0.43
VPS29-207ENST00000549970 TBC1D4O60343 1298 aa17.76■□□□□ 0.43
VPS29-207ENST00000549970 POU2F2P09086 479 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms