RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TMEM191BP0C7N4 346 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 LINC00271P0C7V0 271 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 DLATP10515 647 aaKnown RBP13.17□□□□□ -0.3
DDX55-210ENST00000543016 MYOGP15173 224 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 PNPLA4P41247 253 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 ZNF165P49910 485 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 RBP5P82980 135 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 TFAMQ00059 246 aaKnown RBP13.17□□□□□ -0.3
DDX55-210ENST00000543016 PLCB3Q01970 1234 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 KRT17Q04695 432 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 ELAVL2Q12926 359 aaKnown RBP13.17□□□□□ -0.3
DDX55-210ENST00000543016 UPP1Q16831 310 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 CCDC40Q4G0X9 1142 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 ANO6Q4KMQ2 910 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 SLC39A11Q8N1S5 342 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 MED15Q96RN5 788 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 DPP3Q9NY33 737 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 PUF60Q9UHX1 559 aaKnown RBP13.17□□□□□ -0.3
DDX55-210ENST00000543016 PLAGL2Q9UPG8 496 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 LZTS1Q9Y250 596 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 RBAK-RBAKDNI3L0D1 243 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 NRP1O14786 923 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 PMM2O15305 246 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 N4BP1O75113 896 aaKnown RBP13.16□□□□□ -0.3
DDX55-210ENST00000543016 EEF1GP26641 437 aaKnown RBP13.16□□□□□ -0.3
DDX55-210ENST00000543016 CTNNB1P35222 781 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 OR1G1P47890 313 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 SLC11A1P49279 550 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 ZNF445P59923 1031 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 SPAG1Q07617 926 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 BMS1Q14692 1282 aaKnown RBP13.16□□□□□ -0.3
DDX55-210ENST00000543016 EPC2Q52LR7 807 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 HABP4Q5JVS0 413 aaKnown RBP13.16□□□□□ -0.3
DDX55-210ENST00000543016 LRSAM1Q6UWE0 723 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 C11orf57Q6ZUT1 292 aaPredicted RBP13.16□□□□□ -0.3
DDX55-210ENST00000543016 EFCAB13Q8IY85 973 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 GPR65Q8IYL9 337 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 LRRC52Q8N7C0 313 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 ANKRD20A12PQ8NF67 263 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 TMEM169Q96HH4 297 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 IGSF21Q96ID5 467 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 LMAN2LQ9H0V9 348 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 NFE2L3Q9Y4A8 694 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 RALGAPA2Q2PPJ7 1873 aa13.16□□□□□ -0.3
DDX55-210ENST00000543016 ANO9A1A5B4 782 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 CASTOR2A6NHX0 329 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 LRRIQ3A6PVS8 624 aaPredicted RBP13.15□□□□□ -0.3
DDX55-210ENST00000543016 BECN2A8MW95 431 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 PODXLO00592 558 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 PIRO00625 290 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 P4HA2O15460 535 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 TADA2AO75478 443 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 B3GAT3O94766 335 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 TPM4P67936 248 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 CETN1Q12798 172 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 ZACNQ401N2 412 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 C9orf57Q5W0N0 161 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 PDE12Q6L8Q7 609 aaKnown RBP13.15□□□□□ -0.3
DDX55-210ENST00000543016 TRAPPC11Q7Z392 1133 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 TRIM59Q8IWR1 403 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 FBXO22Q8NEZ5 403 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 TAF4BQ92750 862 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 C18orf25Q96B23 403 aaPredicted RBP13.15□□□□□ -0.3
DDX55-210ENST00000543016 EEF2KMTQ96G04 330 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 ZNF560Q96MR9 790 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 CXCL16Q9H2A7 254 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 ZNF576Q9H609 170 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 TMEM8AQ9HCN3 771 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 DNAJB4Q9UDY4 337 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 SSX2IPQ9Y2D8 614 aa13.15□□□□□ -0.3
DDX55-210ENST00000543016 H3BNC9 293 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 PHACTR2O75167 634 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 FGF18O76093 207 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 STAU1O95793 577 aaKnown RBP13.14□□□□□ -0.31
DDX55-210ENST00000543016 C4BPAP04003 597 aaKnown RBP13.14□□□□□ -0.31
DDX55-210ENST00000543016 TPM2P07951 284 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 ATICP31939 592 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 CLCNKBP51801 687 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 WNT7BP56706 349 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 SOX4Q06945 474 aaPredicted RBP13.14□□□□□ -0.31
DDX55-210ENST00000543016 MYO1EQ12965 1108 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 TRPC3Q13507 836 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 ZNF697Q5TEC3 545 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 KRT39Q6A163 491 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 SV2AQ7L0J3 742 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 DDX53Q86TM3 631 aaKnown RBP13.14□□□□□ -0.31
DDX55-210ENST00000543016 IRF2BP1Q8IU81 584 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 C1orf127Q8N9H9 656 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 KLHL23Q8NBE8 558 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 FAM200AQ8TCP9 573 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 PLEKHO2Q8TD55 490 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 SLC35C1Q96A29 364 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 FAXDC2Q96IV6 333 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 CNOT6LQ96LI5 555 aaKnown RBP13.14□□□□□ -0.31
DDX55-210ENST00000543016 C17orf80Q9BSJ5 609 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 MTMR12Q9C0I1 747 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 GZF1Q9H116 711 aaPredicted RBP13.14□□□□□ -0.31
DDX55-210ENST00000543016 TSPY26PQ9H489 355 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 TUBGCP4Q9UGJ1 667 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 ADAM28Q9UKQ2 775 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms