RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CYP11B2P19099 503 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 SDHBP21912 280 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 CCR2P41597 374 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 LMNB2Q03252 620 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 GRM2Q14416 872 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 DEPTORQ8TB45 409 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 SECISBP2LQ93073 1101 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 FAM126AQ9BYI3 521 aaPredicted RBP19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 CHRDQ9H2X0 955 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 NDRG2Q9UN36 371 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 MRPS17Q9Y2R5 130 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 ACACBO00763 2458 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 GREB1Q4ZG55 1949 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 SMIM28A0A1B0GU29 152 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 PRR5-ARHGAP8B1AHC4 643 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 LRG1P02750 347 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 ARHGAP8P85298 464 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 FAM78AQ5JUQ0 283 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 ATF7IP2Q5U623 682 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 CEP120Q8N960 986 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 CORO1BQ9BR76 489 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 CDV3Q9UKY7 258 aaKnown RBP19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 USP18Q9UMW8 372 aa19.59■□□□□ 0.73
CLSTN3-214ENST00000542663 DCDC2BA2VCK2 349 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 TRAPPC3O43617 180 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 SEC24AO95486 1093 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 ATF2P15336 505 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 RPA1P27694 616 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 MCM7P33993 719 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 FOSBP53539 338 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 PPP2R5AQ15172 486 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 ME3Q16798 604 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 XKR4Q5GH76 650 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 ALKAL1Q6UXT8 129 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 MAMSTRQ6ZN01 415 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 TCEAL8Q8IYN2 117 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 NSUN7Q8NE18 718 aaKnown RBP19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 ASB16Q96NS5 453 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 BRD9Q9H8M2 597 aa19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 MAP1BP46821 2468 aaKnown RBP19.58■□□□□ 0.72
CLSTN3-214ENST00000542663 NCANO14594 1321 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 ARHGEF35A5YM69 484 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 PRRG1O14668 218 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 EFNA5P52803 228 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 VITQ6UXI7 678 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 MAP4K3Q8IVH8 894 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 GTF3C6Q969F1 213 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 ZSWIM3Q96MP5 696 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 ZMAT2Q96NC0 199 aaKnown RBP19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 RTKNQ9BST9 563 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 TRMT61BQ9BVS5 477 aaKnown RBP19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 ZFP14Q9HCL3 533 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 ZNF334Q9HCZ1 680 aaPredicted RBP19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 INSL5Q9Y5Q6 135 aa19.57■□□□□ 0.72
CLSTN3-214ENST00000542663 EML5Q05BV3 1969 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 MAN2B1O00754 1011 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 MOSPD3O75425 235 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 MICAL2O94851 1124 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 ELF1P32519 619 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 ARPP19P56211 112 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 SPEM2Q0P670 501 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 MRPL58Q14197 206 aaKnown RBP19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 LPAL2Q16609 132 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 ECM1Q16610 540 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 HS6ST3Q8IZP7 471 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 CDT1Q9H211 546 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 CYP4F11Q9HBI6 524 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 PTPRHQ9HD43 1115 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 TRPV5Q9NQA5 729 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 GMEB2Q9UKD1 530 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 TNFSF13BQ9Y275 285 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 DENND4CQ5VZ89 1909 aa19.56■□□□□ 0.72
CLSTN3-214ENST00000542663 SPAG17Q6Q759 2223 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 PODXLO00592 558 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 JAK2O60674 1132 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 GRM5P41594 1212 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 OSTNP61366 133 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 IRF7Q92985 503 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 CEP72Q9P209 647 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 DAXXQ9UER7 740 aaPredicted RBP19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 FBXL5Q9UKA1 691 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 TSC2P49815 1807 aa19.55■□□□□ 0.72
CLSTN3-214ENST00000542663 ZNF197O14709 1029 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 SYN3O14994 580 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 MEFVO15553 781 aaPredicted RBP19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 PSMC3P17980 439 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 GDI1P31150 447 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 NRLP54845 237 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 GAS6Q14393 721 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 ANKRD1Q15327 319 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 LAIR1Q6GTX8 287 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 PDZD4Q76G19 769 aaPredicted RBP19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 TAS1R3Q7RTX0 852 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 FAM3CQ92520 227 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 SMARCD2Q92925 531 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 IFT74Q96LB3 600 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 ACO2Q99798 780 aaKnown RBP19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 IER2Q9BTL4 223 aa19.54■□□□□ 0.72
CLSTN3-214ENST00000542663 LMAN1LQ9HAT1 526 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms