RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 TTLL13PA6NNM8 815 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 BTBD18B2RXH4 712 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 K7ERI5 159 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 SYN3O14994 580 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 FOXD2O60548 495 aaPredicted RBP13.46□□□□□ -0.25
SNHG1-216ENST00000541416 LRP3O75074 770 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 CEBPBP17676 345 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 ROR1Q01973 937 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 ORC2Q13416 577 aaPredicted RBP13.46□□□□□ -0.25
SNHG1-216ENST00000541416 LAIR1Q6GTX8 287 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 TSSK4Q6SA08 328 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 TCEAL8Q8IYN2 117 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 E2F7Q96AV8 911 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 MSANTD3Q96H12 275 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 ZNF512Q96ME7 567 aaPredicted RBP13.46□□□□□ -0.25
SNHG1-216ENST00000541416 CNTNAP3BQ96NU0 1288 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 CNTNAP3Q9BZ76 1288 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 CYP4F11Q9HBI6 524 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 TRPV5Q9NQA5 729 aa13.46□□□□□ -0.25
SNHG1-216ENST00000541416 SMIM28A0A1B0GU29 152 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 MED24O75448 989 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 ABLIM3O94929 683 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 CTDNEP1O95476 244 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 PSMC3P17980 439 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 RPL9P32969 192 aaKnown RBP13.45□□□□□ -0.26
SNHG1-216ENST00000541416 MCM7P33993 719 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 GRM5P41594 1212 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 ARPP19P56211 112 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 SLC5A9Q2M3M2 681 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 EEF1DP3Q658K8 133 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 APPL2Q8NEU8 664 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 BSNDQ8WZ55 320 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 FAM3CQ92520 227 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 SMARCD2Q92925 531 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 ASB16Q96NS5 453 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 PLA2G2FQ9BZM2 168 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 GPR88Q9GZN0 384 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 TNFSF13BQ9Y275 285 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 INSL5Q9Y5Q6 135 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 STK24Q9Y6E0 443 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 NOTCH4Q99466 2003 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 NCOR2Q9Y618 2525 aa13.45□□□□□ -0.26
SNHG1-216ENST00000541416 WDR27A2RRH5 827 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 I3L4J1 428 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 PODXLO00592 558 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 ZNF263O14978 683 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 OR52Z1P0C646 297 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 GDI1P31150 447 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 CNR2P34972 360 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 BRCC3P46736 316 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 ANAPC15P60006 121 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 LRRC32Q14392 662 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 GRM2Q14416 872 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 ZNF568Q3ZCX4 644 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 FAM78AQ5JUQ0 283 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 PRSS36Q5K4E3 855 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 ZNF280DQ6N043 979 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 PRR23BQ6ZRT6 265 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 YAF2Q8IY57 180 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 NETO1Q8TDF5 533 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 CSGALNACT1Q8TDX6 532 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 GTF3C6Q969F1 213 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 TCHPQ9BT92 498 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 MRPL4Q9BYD3 311 aaKnown RBP13.44□□□□□ -0.26
SNHG1-216ENST00000541416 CXCL16Q9H2A7 254 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 LMAN1LQ9HAT1 526 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 GOLGA2P5Q9HBQ8 144 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 ZNF334Q9HCZ1 680 aaPredicted RBP13.44□□□□□ -0.26
SNHG1-216ENST00000541416 ASAH2Q9NR71 780 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 PIAS3Q9Y6X2 628 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 COL4A3Q01955 1670 aa13.44□□□□□ -0.26
SNHG1-216ENST00000541416 GPR179Q6PRD1 2367 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 CCDC169A6NNP5 214 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 RETP07949 1114 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 FDPSP14324 419 aaKnown RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 MARCKSP29966 332 aaPredicted RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 CXCL12P48061 93 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 MLLT6P55198 1093 aaPredicted RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 CACNA1BQ00975 2339 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 DMP1Q13316 513 aaPredicted RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 PLD1Q13393 1074 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 FZD5Q13467 585 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 CTXN3Q4LDR2 81 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 NT5DC1Q5TFE4 455 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 C3orf58Q8NDZ4 430 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 DDX1Q92499 740 aaKnown RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 ACAP3Q96P50 834 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 KIFC3Q9BVG8 833 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 OXCT2Q9BYC2 517 aaPredicted RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 RAB34Q9BZG1 259 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 TMEM60Q9H2L4 133 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 SLITRK6Q9H5Y7 841 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 AFF4Q9UHB7 1163 aaKnown RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 KCNG1Q9UIX4 513 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 USP20Q9Y2K6 914 aa13.43□□□□□ -0.26
SNHG1-216ENST00000541416 RBM19Q9Y4C8 960 aaKnown RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.43□□□□□ -0.26
SNHG1-216ENST00000541416 DCDC2BA2VCK2 349 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 CPB1P15086 417 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 KCNE1P15382 129 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms