RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 KCNE5Q9UJ90 142 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 INSL6Q9Y581 213 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 SPATA31A6Q5VVP1 1343 aa4.88□□□□□ -1.63
VPS13A-213ENST00000539950 TCRBV7S2A1N4TA0A589 114 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 ZNF37AP17032 561 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-213ENST00000539950 NOMO3P69849 1222 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 ATP8B2P98198 1209 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 ERCC6LQ2NKX8 1250 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 NOMO2Q5JPE7 1267 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 ZNF362Q5T0B9 420 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-213ENST00000539950 RNF219Q5W0B1 726 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-213ENST00000539950 SYCE2Q6PIF2 218 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 Q6ZNX1 250 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 DPF2Q92785 391 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 CYFIP2Q96F07 1278 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 MARS2Q96GW9 593 aaKnown RBP4.87□□□□□ -1.63
VPS13A-213ENST00000539950 GSTO2Q9H4Y5 243 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 RSAD1Q9HA92 442 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 ZNF277Q9NRM2 450 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-213ENST00000539950 HSFX1Q9UBD0 423 aa4.87□□□□□ -1.63
VPS13A-213ENST00000539950 CDHR4A6H8M9 788 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 FAM171A2A8MVW0 826 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 K7ESF4 209 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 MGST3O14880 152 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 TEX33O43247 280 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 DDCP20711 480 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 AGXTP21549 392 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 SIM1P81133 766 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-213ENST00000539950 ZNF169Q14929 603 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-213ENST00000539950 FAM43AQ8N2R8 423 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 SLC9A6Q92581 669 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 UNKLQ9H9P5 680 aaKnown RBP4.86□□□□□ -1.63
VPS13A-213ENST00000539950 CASS4Q9NQ75 786 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 TBCCD1Q9NVR7 557 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 TLK1Q9UKI8 766 aa4.86□□□□□ -1.63
VPS13A-213ENST00000539950 MTO1Q9Y2Z2 717 aaKnown RBP4.86□□□□□ -1.63
VPS13A-213ENST00000539950 MYBBP1AQ9BQG0 1328 aaKnown RBP4.86□□□□□ -1.63
VPS13A-213ENST00000539950 CD38P28907 300 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 VAV2P52735 878 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 SLFN5Q08AF3 891 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 GEN1Q17RS7 908 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 COLEC12Q5KU26 742 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 FOXR2Q6PJQ5 311 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 FITM2Q8N6M3 262 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 PPM1NQ8N819 430 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 DCBLD1Q8N8Z6 715 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 BOLLQ8N9W6 283 aaKnown RBP4.85□□□□□ -1.63
VPS13A-213ENST00000539950 ATL2Q8NHH9 583 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 TBC1D15Q8TC07 691 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 CAGE1Q8TC20 777 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 NRG4Q8WWG1 115 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 RAB24Q969Q5 203 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 LRFN3Q9BTN0 628 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 MANSC1Q9H8J5 431 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 ADARB2Q9NS39 739 aaKnown RBP4.85□□□□□ -1.63
VPS13A-213ENST00000539950 FOXJ2Q9P0K8 574 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 INTUQ9ULD6 942 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 WASHC2AQ641Q2 1341 aa4.85□□□□□ -1.63
VPS13A-213ENST00000539950 PHLDB1Q86UU1 1377 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 KIAA0391O15091 583 aaKnown RBP4.84□□□□□ -1.63
VPS13A-213ENST00000539950 ERN1O75460 977 aaKnown RBP4.84□□□□□ -1.63
VPS13A-213ENST00000539950 ALAS1P13196 640 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 SLC6A4P31645 630 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 RARRES1P49788 294 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 KLF1Q13351 362 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-213ENST00000539950 DACT2Q5SW24 774 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 RHOT1Q8IXI2 618 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 Q8NA96 180 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 NUP133Q8WUM0 1156 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 PTCD3Q96EY7 689 aaKnown RBP4.84□□□□□ -1.63
VPS13A-213ENST00000539950 C7orf25Q9BPX7 421 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 AIFM2Q9BRQ8 373 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 DUSP26Q9BV47 211 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 KIAA1586Q9HCI6 787 aa4.84□□□□□ -1.63
VPS13A-213ENST00000539950 FCER1AP12319 257 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-213ENST00000539950 AMOTL1Q8IY63 956 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 CNTD1Q8N815 330 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 SSH3Q8TE77 659 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 PNKPQ96T60 521 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 KCTD5Q9NXV2 234 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 VSX1Q9NZR4 365 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-213ENST00000539950 TUBD1Q9UJT1 453 aa4.83□□□□□ -1.64
VPS13A-213ENST00000539950 MYADML2A6NDP7 307 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 TRIM75PA6NK02 468 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 C1QL1O75973 258 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 CLSTN1O94985 981 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 IGLV2-14P01704 120 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 SBK3P0C264 359 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 WASP42768 502 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 ELLP55199 621 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-213ENST00000539950 CTXN1P60606 82 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 MRPS35P82673 323 aaKnown RBP4.82□□□□□ -1.64
VPS13A-213ENST00000539950 CREMQ03060 361 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 TARDBPQ13148 414 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS13A-213ENST00000539950 HNRNPA0Q13151 305 aaKnown RBP4.82□□□□□ -1.64
VPS13A-213ENST00000539950 CLUL1Q15846 466 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 INAVAQ3KP66 663 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 COLGALT2Q8IYK4 626 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 CBARPQ8N350 705 aaPredicted RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms