RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 BAATQ14032 418 aaPredicted RBP13.41□□□□□ -0.26
SFSWAP-208ENST00000539506 RNF207Q6ZRF8 634 aa13.41□□□□□ -0.26
SFSWAP-208ENST00000539506 FMNL3Q8IVF7 1028 aa13.41□□□□□ -0.26
SFSWAP-208ENST00000539506 LPAR1Q92633 364 aa13.41□□□□□ -0.26
SFSWAP-208ENST00000539506 CNOT10Q9H9A5 744 aaKnown RBP13.41□□□□□ -0.26
SFSWAP-208ENST00000539506 ATP6V0A4Q9HBG4 840 aa13.41□□□□□ -0.26
SFSWAP-208ENST00000539506 WDR64B1ANS9 1081 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 VWA5AO00534 786 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 RIPK2O43353 540 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 PHF2O75151 1096 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 SPAG7O75391 227 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 MTA2O94776 668 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 CYP1A2P05177 515 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 GZMAP12544 262 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 KRT39Q6A163 491 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 SV2AQ7L0J3 742 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 NIM1KQ8IY84 436 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 ZNF564Q8TBZ8 553 aaPredicted RBP13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 ZNF516Q92618 1163 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 RPS6KC1Q96S38 1066 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 HEMGNQ9BXL5 484 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 SLC12A4Q9UP95 1085 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 TP73O15350 636 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 CLDN3O15551 220 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 SNX3O60493 162 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 GPC3P51654 580 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 ARHGEF16Q5VV41 709 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 BZW1Q7L1Q6 419 aaKnown RBP13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 CCDC50Q8IVM0 306 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 SRRM1Q8IYB3 904 aaKnown RBP13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 FBXL18Q96ME1 805 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 ASIC3Q9UHC3 531 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 ZMYND8Q9ULU4 1186 aaPredicted RBP13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 C15orf41Q9Y2V0 281 aa13.4□□□□□ -0.26
SFSWAP-208ENST00000539506 MIF4GDA9UHW6 222 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 SPOPO43791 374 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 PDHA1P08559 390 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 LMBRD2Q68DH5 695 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 SCARA3Q6AZY7 606 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 ZNF449Q6P9G9 518 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 TAB3Q8N5C8 712 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 MFSD14AQ96MC6 490 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 HERPUD2Q9BSE4 406 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 MOV10L1Q9BXT6 1211 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 TMEM8AQ9HCN3 771 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 XPNPEP1Q9NQW7 623 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 RAB20Q9NX57 234 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 GABBR1Q9UBS5 961 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 PCYOX1Q9UHG3 505 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 SYNGAP1Q96PV0 1343 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 MFAP3P55082 362 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 DHX34Q14147 1143 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 VSIG10LQ86VR7 867 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 UBL4BQ8N7F7 174 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 C9orf72Q96LT7 481 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 NAP1L3Q99457 506 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 NTPCRQ9BSD7 190 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 CDC42EP4Q9H3Q1 356 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 KMT5AQ9NQR1 393 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 PDLIM7Q9NR12 457 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 ANKEF1Q9NU02 776 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 NKX1-2Q9UD57 310 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 FAM187AA6NFU0 413 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 KIF1CO43896 1103 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 JAK3P52333 1124 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 EIF3BP55884 814 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 SESN3P58005 492 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 CDR2Q01850 454 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 SP4Q02446 784 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 CYP24A1Q07973 514 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 PSPC1Q8WXF1 523 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 ZNF653Q96CK0 615 aa13.39□□□□□ -0.27
SFSWAP-208ENST00000539506 LGR5O75473 907 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 CETPP11597 493 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 YY1P25490 414 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 DRG2P55039 364 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 DMP1Q13316 513 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 PRAMEF18Q5VWM3 479 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 CYP4F22Q6NT55 531 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 SAMD7Q7Z3H4 446 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 SLC13A5Q86YT5 568 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 FBXL13Q8NEE6 735 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 CEP170P1Q96L14 293 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 ETNK1Q9HBU6 452 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 STK32BQ9NY57 414 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 USP15Q9Y4E8 981 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 NR3C2P08235 984 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 CFHP08603 1231 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 KCNA2P16389 499 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 CHRNA3P32297 505 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 SNRPFP62306 86 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 KRT76Q01546 638 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 C6orf118Q5T5N4 469 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 NBPF12Q5TAG4 269 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 SWSAP1Q6NVH7 229 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 POMGNT1Q8WZA1 660 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 TIPINQ9BVW5 301 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 WNT8AQ9H1J5 351 aa13.38□□□□□ -0.27
SFSWAP-208ENST00000539506 RNF146Q9NTX7 359 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms