RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TUBGCP4Q9UGJ1 667 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 RCOR1Q9UKL0 485 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 CFAP45Q9UL16 551 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 STYXL1Q9Y6J8 313 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 MYO10Q9HD67 2058 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 TCHHQ07283 1943 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 FAM86C2PA6NEL3 165 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 ADAM12O43184 909 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 TRAPPC3O43617 180 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 RFPL2O75678 378 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 ADRB2P07550 413 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 TKTP29401 623 aaKnown RBP16.11■□□□□ 0.17
USP28-204ENST00000537642 ME1P48163 572 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 CASP5P51878 434 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 PPP2R3AQ06190 1150 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 ZBTB6Q15916 424 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 L1TD1Q5T7N2 865 aaKnown RBP16.11■□□□□ 0.17
USP28-204ENST00000537642 PDXDC1Q6P996 788 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 C15orf39Q6ZRI6 1047 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 HDAC7Q8WUI4 952 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 KIF12Q96FN5 646 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 FGFBP2Q9BYJ0 223 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 TNMDQ9H2S6 317 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 PLEKHA4Q9H4M7 779 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 RPF1Q9H9Y2 349 aaKnown RBP16.11■□□□□ 0.17
USP28-204ENST00000537642 TSHZ2Q9NRE2 1034 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 OLFML3Q9NRN5 406 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 DPP7Q9UHL4 492 aa16.11■□□□□ 0.17
USP28-204ENST00000537642 CPSF3Q9UKF6 684 aaKnown RBP16.11■□□□□ 0.17
USP28-204ENST00000537642 CCDC195A0A1B0GUA6 201 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 C2CD4DB7Z1M9 353 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 GPR37L1O60883 481 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 GCNT3O95395 438 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 PAPLNO95428 1278 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 ACOT2P49753 483 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 RESP18Q5W5W9 173 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 ADALQ6DHV7 355 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 SLFN12LQ6IEE8 588 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 ELMSAN1Q6PJG2 1045 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 IQUBQ8NA54 791 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 KREMEN2Q8NCW0 462 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 CHAMP1Q96JM3 812 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 ACCSQ96QU6 501 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 LRFN3Q9BTN0 628 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 TRIM9Q9C026 710 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 MTRRQ9UBK8 725 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 AGO2Q9UKV8 859 aaKnown RBP16.1■□□□□ 0.17
USP28-204ENST00000537642 NR2E1Q9Y466 385 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 DOCK6Q96HP0 2047 aa16.1■□□□□ 0.17
USP28-204ENST00000537642 POLR2DO15514 142 aaKnown RBP16.09■□□□□ 0.17
USP28-204ENST00000537642 CYP3A5P20815 502 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 ADSSP30520 456 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 LRPAP1P30533 357 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 GUCY2FP51841 1108 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 TMEM31Q5JXX7 168 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 RSPO2Q6UXX9 243 aaPredicted RBP16.09■□□□□ 0.17
USP28-204ENST00000537642 ANKS3Q6ZW76 656 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 CCDC65Q8IXS2 484 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 ZNF707Q96C28 371 aaPredicted RBP16.09■□□□□ 0.17
USP28-204ENST00000537642 FAM212AQ96EL1 285 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 SUSD3Q96L08 255 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 RHOBTB2Q9BYZ6 727 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 LRRC27Q9C0I9 530 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 FBXW11Q9UKB1 542 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 UBQLN1Q9UMX0 589 aaKnown RBP16.09■□□□□ 0.17
USP28-204ENST00000537642 EXOC7Q9UPT5 735 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 NUB1Q9Y5A7 615 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 PCDHB13Q9Y5F0 798 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 BACE2Q9Y5Z0 518 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 TECTAO75443 2155 aa16.09■□□□□ 0.17
USP28-204ENST00000537642 TRIOO75962 3097 aa16.08■□□□□ 0.17
USP28-204ENST00000537642 SYN3O14994 580 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 OR1D2P34982 312 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 AMPD3Q01432 767 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 ALCAMQ13740 583 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 RAB33AQ14088 237 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 VARS2Q5ST30 1063 aaKnown RBP16.08■□□□□ 0.16
USP28-204ENST00000537642 JADE1Q6IE81 842 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 CNNM4Q6P4Q7 775 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 CRELD2Q6UXH1 353 aaPredicted RBP16.08■□□□□ 0.16
USP28-204ENST00000537642 CYP26C1Q6V0L0 522 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 CD302Q8IX05 232 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 POMGNT1Q8WZA1 660 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 HPS3Q969F9 1004 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 TSPAN18Q96SJ8 248 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 C7orf25Q9BPX7 421 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 ZDHHC7Q9NXF8 308 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 FAM13BQ9NYF5 915 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 USTQ9Y2C2 406 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.08■□□□□ 0.16
USP28-204ENST00000537642 CDY1Q9Y6F8 540 aa16.08■□□□□ 0.16
USP28-204ENST00000537642 XPOTO43592 962 aaKnown RBP16.07■□□□□ 0.16
USP28-204ENST00000537642 ZMYND10O75800 440 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 PRPF6O94906 941 aaKnown RBP16.07■□□□□ 0.16
USP28-204ENST00000537642 NFICP08651 508 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 MCM4P33991 863 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 ASIC1P78348 528 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 MRPL58Q14197 206 aaKnown RBP16.07■□□□□ 0.16
USP28-204ENST00000537642 POSTNQ15063 836 aa16.07■□□□□ 0.16
USP28-204ENST00000537642 SPATA1Q5VX52 437 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms