RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 GNAI1P63096 354 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 FAM189BP81408 668 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 RESTQ13127 1097 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 PABPC1LQ4VXU2 614 aaKnown RBP3.66□□□□□ -1.82
CD44-238ENST00000534296 DACT2Q5SW24 774 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 KRTAP5-3Q6L8H2 238 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 UBE3BQ7Z3V4 1068 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 LDLRAD3Q86YD5 345 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 SLC9A6Q92581 669 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 RNF31Q96EP0 1072 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 MLST8Q9BVC4 326 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 ALOXE3Q9BYJ1 711 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 CCDC8Q9H0W5 538 aaPredicted RBP3.66□□□□□ -1.82
CD44-238ENST00000534296 SERHL2Q9H4I8 314 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 GALNT9Q9HCQ5 603 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 KLHL11Q9NVR0 708 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 TBCCD1Q9NVR7 557 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 CALCOCO1Q9P1Z2 691 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 PACSIN3Q9UKS6 424 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 DMTF1Q9Y222 760 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 POLHQ9Y253 713 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 SIK3Q9Y2K2 1263 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 HS3ST4Q9Y661 456 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 WASHC2CQ9Y4E1 1318 aa3.66□□□□□ -1.82
CD44-238ENST00000534296 TCRBV7S2A1N4TA0A589 114 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 CDHR4A6H8M9 788 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 CCDC154A6NI56 674 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 FOXN1O15353 648 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 HTRA2O43464 458 aaPredicted RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 CD1AP06126 327 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 CT47B1P0C2W7 299 aaPredicted RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 ITGAMP11215 1152 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 NR4A1P22736 598 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 EVA1CP58658 441 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 EXOSC10Q01780 885 aaKnown RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 PIGFQ07326 219 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 ZNF844Q08AG5 666 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 PCBP2Q15366 365 aaKnown RBP eCLIP3.65□□□□□ -1.83
CD44-238ENST00000534296 HECTD2Q5U5R9 776 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 ZNF627Q7L945 461 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 CMTR2Q8IYT2 770 aaKnown RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 RPUSD2Q8IZ73 545 aaKnown RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 TMEM132CQ8N3T6 1108 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 OR2I1PQ8NGU4 316 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 TBC1D15Q8TC07 691 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 CHMP4CQ96CF2 233 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 CLPTM1LQ96KA5 538 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 COQ10AQ96MF6 247 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 PUS7Q96PZ0 661 aaKnown RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 WDR11Q9BZH6 1224 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 IKZF4Q9H2S9 585 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 GSTO2Q9H4Y5 243 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 TYW1Q9NV66 732 aaKnown RBP3.65□□□□□ -1.83
CD44-238ENST00000534296 ANKFY1Q9P2R3 1169 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 TUBD1Q9UJT1 453 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 NEU2Q9Y3R4 380 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 PCDHA13Q9Y5I0 950 aa3.65□□□□□ -1.83
CD44-238ENST00000534296 UNC119BA6NIH7 251 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 MARCH11A6NNE9 402 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 GRM6O15303 877 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 ORC4O43929 436 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 LPXNO60711 386 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 IL33O95760 270 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 AMY1AP04745 511 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 FGFR4P22455 802 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 FDXRP22570 491 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 CXADRP78310 365 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 HSD11B2P80365 405 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 ATP8B2P98198 1209 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 OCA2Q04671 838 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 CSRP2Q16527 193 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 SMN1Q16637 294 aaKnown RBP3.64□□□□□ -1.83
CD44-238ENST00000534296 PREPLQ4J6C6 727 aaPredicted RBP3.64□□□□□ -1.83
CD44-238ENST00000534296 VRK3Q8IV63 474 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 ZGPATQ8N5A5 531 aaKnown RBP3.64□□□□□ -1.83
CD44-238ENST00000534296 COA7Q96BR5 231 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 BOD1Q96IK1 185 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 ZSWIM1Q9BR11 485 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 ASPSCR1Q9BZE9 553 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 SIK2Q9H0K1 926 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 TOR3AQ9H497 397 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 FBXO34Q9NWN3 711 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 JKAMPQ9P055 326 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 C11orf21Q9P2W6 132 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 SLC23A1Q9UHI7 598 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 MAP3K2Q9Y2U5 619 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 LUC7L2Q9Y383 392 aaKnown RBP3.64□□□□□ -1.83
CD44-238ENST00000534296 IPPQ9Y573 584 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 DMRT1Q9Y5R6 373 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 PNPLA7Q6ZV29 1317 aa3.64□□□□□ -1.83
CD44-238ENST00000534296 TRGV11A0A075B6L2 103 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 PIPSLA2A3N6 862 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 MYADML2A6NDP7 307 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 SLC16A6O15403 523 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 PCDHGA12O60330 932 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 SPDEFO95238 335 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 ANXA1P04083 346 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 FTH1P19P0C7X4 201 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 TGM1P22735 817 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 SLC6A2P23975 617 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms