RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SAMM50Q9Y512 469 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 PCDHA10Q9Y5I2 948 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 MYH9P35579 1960 aaKnown RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 IGLV3-22A0A075B6J6 115 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 hCG_1642624A0A1W2PR95 340 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 WDR27A2RRH5 827 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 WDR64B1ANS9 1081 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 PATE3B3GLJ2 98 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 FAM86B1E9PN63 330 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 SPECC1L-ADORA2AF8WAN1 911 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 J3QL48 77 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 TADA2AO75478 443 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 RHOBTB1O94844 696 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 FAM86B2P0C5J1 330 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 SMARCA1P28370 1054 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 CTHP32929 405 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 SREBF1P36956 1147 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 VIPR2P41587 438 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 DNM2P50570 870 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 MLLT6P55198 1093 aaPredicted RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 SKOR1P84550 965 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 CCINQ13939 588 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 KARSQ15046 597 aaKnown RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 TARBP2Q15633 366 aaKnown RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 UGCGQ16739 394 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 UVSSAQ2YD98 709 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 PRSS36Q5K4E3 855 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 PKN3Q6P5Z2 889 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 HEATR3Q7Z4Q2 680 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 CEP57Q86XR8 500 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 KSR1Q8IVT5 923 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 CMTR1Q8N1G2 835 aaKnown RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 SYNPOQ8N3V7 929 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 CNNM3Q8NE01 707 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 PRR7Q8TB68 274 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 LNX1Q8TBB1 728 aaPredicted RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 FAM200AQ8TCP9 573 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 HASPINQ8TF76 798 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 SMARCD2Q92925 531 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 TCEAL4Q96EI5 215 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 UBL7Q96S82 380 aaPredicted RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 ZNF577Q9BSK1 485 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 TTPALQ9BTX7 342 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 DSCC1Q9BVC3 393 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 C8orf33Q9H7E9 229 aaPredicted RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 SLC24A3Q9HC58 644 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 NRBP2Q9NSY0 501 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 TBC1D22BQ9NU19 505 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 MIOSQ9NXC5 875 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 SUCLA2Q9P2R7 463 aaPredicted RBP7.22□□□□□ -1.25
CD44-237ENST00000534082 SLC8A2Q9UPR5 921 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 IPPQ9Y573 584 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 RAI2Q9Y5P3 530 aa7.22□□□□□ -1.25
CD44-237ENST00000534082 MYBPHLA2RUH7 354 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 DCLK1O15075 740 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 DDAH1O94760 285 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 FOSP01100 380 aaPredicted RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 CCNYL3P0C7X3 344 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 HOXA11P31270 313 aaPredicted RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 OR1D2P34982 312 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 RDXP35241 583 aaKnown RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 CCR2P41597 374 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 TRDNQ13061 729 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 RAB33AQ14088 237 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 HSP90AA2PQ14568 343 aaPredicted RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 SART3Q15020 963 aaKnown RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 PON2Q15165 354 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 MTERF2Q49AM1 385 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 FAM171A1Q5VUB5 890 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 RTL10Q7L3V2 364 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 RAB44Q7Z6P3 723 aaPredicted RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 ZNF605Q86T29 641 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 RALGPS2Q86X27 583 aaPredicted RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 YAF2Q8IY57 180 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 ZNF654Q8IZM8 581 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 SRBD1Q8N5C6 995 aaKnown RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 MDM1Q8TC05 714 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 ZNF775Q96BV0 537 aaPredicted RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 CRELD1Q96HD1 420 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 ZSWIM3Q96MP5 696 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 MAP3K14Q99558 947 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 HNRNPABQ99729 332 aaKnown RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 CORO1BQ9BR76 489 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 LZTS2Q9BRK4 669 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 PAAF1Q9BRP4 392 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 EIF2AQ9BY44 585 aaKnown RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 IFT122Q9HBG6 1241 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 CACNG4Q9UBN1 327 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 HES2Q9Y543 173 aa7.21□□□□□ -1.26
CD44-237ENST00000534082 PDCD11Q14690 1871 aaKnown RBP7.21□□□□□ -1.26
CD44-237ENST00000534082 EML5Q05BV3 1969 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 ASCC3Q8N3C0 2202 aaKnown RBP7.2□□□□□ -1.26
CD44-237ENST00000534082 ASXL3Q9C0F0 2248 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 IGKV6-21A0A0C4DH24 114 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 TMEM150BA6NC51 233 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 HEPACAM2A8MVW5 462 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 ZNF197O14709 1029 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 CHADO15335 359 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 MICAL2O94851 1124 aa7.2□□□□□ -1.26
CD44-237ENST00000534082 KIF4AO95239 1232 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms