RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PLEKHA5Q9HAU0 1116 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 SRPRBQ9Y5M8 271 aaKnown RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 K7ELQ4 463 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-211ENST00000533492 SYN3O14994 580 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 CCL16O15467 120 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 CXCL8P10145 99 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 FSHRP23945 695 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 HOXA9P31269 272 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 HOXD11P31277 338 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-211ENST00000533492 ABCD1P33897 745 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 MCM4P33991 863 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 VCPP55072 806 aaKnown RBP16.84■□□□□ 0.29
CPSF1-211ENST00000533492 NHLH1Q02575 133 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 VARS2Q5ST30 1063 aaKnown RBP16.84■□□□□ 0.29
CPSF1-211ENST00000533492 RRAGBQ5VZM2 374 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 GRASPQ7Z6J2 395 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-211ENST00000533492 SLC7A14Q8TBB6 771 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 KCNN1Q92952 543 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 NXPE3Q969Y0 559 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 EPS15L1Q9UBC2 864 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 FBXL21Q9UKT6 434 aa16.84■□□□□ 0.29
CPSF1-211ENST00000533492 H7C4K7 107 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 LAMP2P13473 410 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 ELF1P32519 619 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 PTPN5P54829 565 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 ARPP19P56211 112 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 PPP2R3AQ06190 1150 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 SPAG1Q07617 926 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 RSPO2Q6UXX9 243 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-211ENST00000533492 USP49Q70CQ1 688 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 RTL10Q7L3V2 364 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 RSAD2Q8WXG1 361 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 KIF12Q96FN5 646 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 CLIC6Q96NY7 704 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 HAPLN2Q9GZV7 340 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 ZSCAN16Q9H4T2 348 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-211ENST00000533492 RPF1Q9H9Y2 349 aaKnown RBP16.83■□□□□ 0.28
CPSF1-211ENST00000533492 STK17AQ9UEE5 414 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 FBXO2Q9UK22 296 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-211ENST00000533492 DUSP12Q9UNI6 340 aa16.83■□□□□ 0.28
CPSF1-211ENST00000533492 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-211ENST00000533492 TTC26A0AVF1 554 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 OGTO15294 1046 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 MEFVO15553 781 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-211ENST00000533492 XPOTO43592 962 aaKnown RBP16.82■□□□□ 0.28
CPSF1-211ENST00000533492 STX6O43752 255 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 PIGRP01833 764 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 NMT1P30419 496 aaKnown RBP16.82■□□□□ 0.28
CPSF1-211ENST00000533492 TNFSF9P41273 254 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 SV2BQ7L1I2 683 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 DYMQ7RTS9 669 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 ALYREFQ86V81 257 aaKnown RBP16.82■□□□□ 0.28
CPSF1-211ENST00000533492 APPL2Q8NEU8 664 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 PRSS33Q8NF86 280 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 ZNF461Q8TAF7 563 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 FAM212AQ96EL1 285 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 MSTO1Q9BUK6 570 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 TUBGCP4Q9UGJ1 667 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 UBQLN1Q9UMX0 589 aaKnown RBP16.82■□□□□ 0.28
CPSF1-211ENST00000533492 MTMR6Q9Y217 621 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 ZFP37Q9Y6Q3 630 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-211ENST00000533492 DOCK6Q96HP0 2047 aa16.82■□□□□ 0.28
CPSF1-211ENST00000533492 LACTBL1A8MY62 500 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 PRRG1O14668 218 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 NTHL1P78549 312 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 GTF2BQ00403 316 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 CTXN3Q4LDR2 81 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 SLC8B1Q6J4K2 584 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 CCDC73Q6ZRK6 1079 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 SLC44A3Q8N4M1 653 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 FLCNQ8NFG4 579 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 SUSD3Q96L08 255 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 DOCK8Q8NF50 2099 aa16.81■□□□□ 0.28
CPSF1-211ENST00000533492 A0A0B4J269 797 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 NARSO43776 548 aaKnown RBP16.8■□□□□ 0.28
CPSF1-211ENST00000533492 LRG1P02750 347 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 POU2F2P09086 479 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 CYP3A5P20815 502 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 LRPAP1P30533 357 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 NUBP1P53384 320 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 ROR1Q01973 937 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 SLC39A14Q15043 492 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 ENOX2Q16206 610 aaKnown RBP16.8■□□□□ 0.28
CPSF1-211ENST00000533492 ZC2HC1CQ53FD0 456 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-211ENST00000533492 ASTLQ6HA08 431 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-211ENST00000533492 SLFN12LQ6IEE8 588 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 ZNF280DQ6N043 979 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 MAP4K3Q8IVH8 894 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 CD302Q8IX05 232 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 DDX12PQ92771 950 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 USP28Q96RU2 1077 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 TSPAN18Q96SJ8 248 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 PANK2Q9BZ23 570 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 IRF2BPLQ9H1B7 796 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 FBXL5Q9UKA1 691 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 CDH7Q9ULB5 785 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 WDFY4Q6ZS81 3184 aa16.8■□□□□ 0.28
CPSF1-211ENST00000533492 WDR27A2RRH5 827 aa16.79■□□□□ 0.28
CPSF1-211ENST00000533492 STK25O00506 426 aa16.79■□□□□ 0.28
CPSF1-211ENST00000533492 ABLIM3O94929 683 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms