RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PFKFB1P16118 471 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 TARBP2Q15633 366 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 AGMOQ6ZNB7 445 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 IGSF22Q8N9C0 903 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ERLEC1Q96DZ1 483 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 INTS4Q96HW7 963 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 POP1Q99575 1024 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ODF2LQ9ULJ1 636 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ARL5CA6NH57 179 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 DLL1O00548 723 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 PPFIA2O75334 1257 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 OR4Q2P0C623 313 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 RFC5P40937 340 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 PTENP60484 403 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 BIRC3Q13489 604 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 TAS1R1Q7RTX1 841 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 NME8Q8N427 588 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 GPR152Q8TDT2 470 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 TAF4BQ92750 862 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 SMARCE1Q969G3 411 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 ZNF558Q96NG5 402 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 NIFKQ9BYG3 293 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 IQCGQ9H095 443 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 ANKEF1Q9NU02 776 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 ZNF446Q9NWS9 450 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 ATG2BQ96BY7 2078 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 CNOT1A5YKK6 2376 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 HOXD8P13378 290 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 DNAJB1P25685 340 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 HOXA11P31270 313 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 CASP4P49662 377 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 FXR2P51116 673 aaKnown RBP eCLIP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 CCNHP51946 323 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 ARSHQ5FYA8 562 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 CCDC70Q6NSX1 233 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 SCARA5Q6ZMJ2 495 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 NPAS4Q8IUM7 802 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 DAW1Q8N136 415 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 RAD54LQ92698 747 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 MMS19Q96T76 1030 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 BLOC1S4Q9NUP1 217 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 PCDHA11Q9Y5I1 949 aa8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 MORC2Q9Y6X9 1032 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-219ENST00000514096 C9IYK1 514 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ANKRD63C9JTQ0 380 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 NR1I2O75469 434 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 RFPL2O75678 378 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 TNNI1P19237 187 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 NUMBP49757 651 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 MGAT3Q09327 533 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ORC1Q13415 861 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 PTPAQ15257 358 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ZSCAN23Q3MJ62 389 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 TMCO3Q6UWJ1 677 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 IQUBQ8NA54 791 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 SNX21Q969T3 373 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 FTHL17Q9BXU8 183 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ATP6V1DQ9Y5K8 247 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 SRPRBQ9Y5M8 271 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 EME2A4GXA9 379 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 PHACTR2O75167 634 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 DGKIO75912 1065 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 PFKMP08237 780 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ELF1P32519 619 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 BMP8BP34820 402 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 LONP1P36776 959 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 BMPR1AP36894 532 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 SLC11A1P49279 550 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 MBTD1Q05BQ5 628 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ARMCX5Q6P1M9 558 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 IFNLR1Q8IU57 520 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 RDM1Q8NG50 284 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 CCDC114Q96M63 670 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 MBOAT7Q96N66 472 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 POLR3CQ9BUI4 534 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 NRDE2Q9H7Z3 1164 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 EXOC1Q9NV70 894 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 NXF1Q9UBU9 619 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 FBXO9Q9UK97 447 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 KDM3AQ9Y4C1 1321 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 NID2Q14112 1375 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 A0A0U1RQF3 1178 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 SOAT2O75908 522 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 STK10O94804 968 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 SKILP12757 684 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 LRMPQ12912 555 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 RARS2Q5T160 578 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 FKBP15Q5T1M5 1219 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 LRRC55Q6ZSA7 311 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 HACE1Q8IYU2 909 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 MIEF2Q96C03 454 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 CBWD1Q9BRT8 395 aa8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 TPRP12270 2363 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-219ENST00000514096 FAM86C2PA6NEL3 165 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 NRP1O14786 923 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 MYBL1P10243 752 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 SARSP49591 514 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 SMAD3P84022 425 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms