RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SYN2Q92777 582 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 SH3GL1Q99961 368 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 NEU2Q9Y3R4 380 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 POC1B-GALNT4F8VUJ3 575 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 BUD23O43709 281 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 PHF2O75151 1096 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 RPA3P35244 121 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 LRP8Q14114 963 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 NONOQ15233 471 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ZNF394Q53GI3 561 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 PRELID2Q8N945 189 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 C9orf72Q96LT7 481 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 NEURL2Q9BR09 285 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 SPZ1Q9BXG8 430 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ASIC3Q9UHC3 531 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 VPS51Q9UID3 782 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 SYNPO2Q9UMS6 1093 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 S100BP04271 92 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 MZF1P28698 734 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 TCF7P36402 384 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 KRT81Q14533 505 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 PPP2R5BQ15173 497 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ZNF423Q2M1K9 1284 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ITPRIPL1Q6GPH6 555 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 CYP4F22Q6NT55 531 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 FASTKD5Q7L8L6 764 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 NLRX1Q86UT6 975 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ICA1LQ8NDH6 482 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 CNBD2Q96M20 576 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 NACAP1Q9BZK3 213 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 CDH16O75309 829 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 FUCA1P04066 466 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 PCYT1AP49585 367 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 KRT72Q14CN4 511 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC1A5Q15758 541 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC43A3Q8NBI5 491 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 ALG3Q92685 438 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 TUBB6Q9BUF5 446 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SENP6Q9GZR1 1112 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 ANKRD2Q9GZV1 360 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SMYD3Q9H7B4 428 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 TBC1D23Q9NUY8 699 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SEPT11Q9NVA2 429 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 IQCA1LA6NCM1 817 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 GOLGA8TH3BQL2 631 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 TTC4O95801 387 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 LDHCP07864 332 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 GOLGA8HP0CJ92 632 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 VEGFAP15692 232 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SERPINB6P35237 376 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 HOXD13P35453 343 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 GALCP54803 685 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 IFIT5Q13325 482 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SNRNP48Q6IEG0 339 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC35G2Q8TBE7 412 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 ZNF75CPQ92670 426 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 DCUN1D5Q9BTE7 237 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 SPATA31A3Q5VYP0 1347 aa12.73□□□□□ -0.37
LIMCH1-213ENST00000511496 EYA2O00167 538 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 GYS1P13807 737 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CDH3P22223 829 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CHRNA3P32297 505 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 HNRNPDQ14103 355 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RABL6Q3YEC7 729 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 DCAF6Q58WW2 860 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 OGFOD2Q6N063 350 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 SLFN11Q7Z7L1 901 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 DHDDSQ86SQ9 333 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CABP7Q86V35 215 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 GSTCDQ8NEC7 633 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ART4Q93070 314 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CRNKL1Q9BZJ0 848 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RBM38Q9H0Z9 239 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC7A8Q9UHI5 535 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ZNF532Q9HCE3 1301 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 MRC1P22897 1456 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CAPN8A6NHC0 703 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 K7EPI3 171 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 IRS4O14654 1257 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 DDX3YO15523 660 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 FGFR1P11362 822 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 NLRP6P59044 892 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ZBTB17Q13105 803 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 PDK4Q16654 411 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 C10orf76Q5T2E6 689 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 VASH1Q7L8A9 365 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ZBTB46Q86UZ6 589 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 SHKBP1Q8TBC3 707 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CCDC77Q9BR77 488 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 PEAK1Q9H792 1746 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 KANSL3Q9P2N6 904 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ANKFY1Q9P2R3 1169 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 FLT1P17948 1338 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RSPH10B2B2RC85 870 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 F8W8V4 182 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 MAGEB2O15479 319 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 DGKIO75912 1065 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RSPH10BP0C881 870 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RARBP10826 455 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms