RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, human

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-208	ENST00000508604	WNT6	Q9Y6F9	365 aa		4.09	□□□□□ -1.76
NUP54-208	ENST00000508604	CGB1	A6NKQ9	187 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	GSG1L2	A8MUP6	293 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	ENDOD1	O94919	500 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	SLC6A2	P23975	617 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	SESN3	P58005	492 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	CCT2	P78371	535 aa	Known RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	MRPS9	P82933	396 aa	Known RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	EXOSC10	Q01780	885 aa	Known RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	SF3B3	Q15393	1217 aa	Known RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	GEN1	Q17RS7	908 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	TSTD2	Q5T7W7	516 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604		Q6ZVL8	140 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604		Q8N9P0	234 aa	Predicted RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	C9orf106	Q8NAJ2	232 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	LEO1	Q8WVC0	666 aa	Predicted RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	CASKIN2	Q8WXE0	1202 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	MARS2	Q96GW9	593 aa	Known RBP	4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	GREM2	Q9H772	168 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	PLAA	Q9Y263	795 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	SIK3	Q9Y2K2	1263 aa		4.08	□□□□□ -1.76
NUP54-208	ENST00000508604	MANSC4	A6NHS7	340 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	MPPED1	O15442	326 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	PRKCG	P05129	697 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	GRIA3	P42263	894 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	ALDH1A3	P47895	512 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	PDCD1	Q15116	288 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	FAM153C	Q494X1	144 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	ZNF425	Q6IV72	752 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	UBE3B	Q7Z3V4	1068 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	MFSD3	Q96ES6	412 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	ADI1	Q9BV57	179 aa		4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	ACE2	Q9BYF1	805 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP54-208	ENST00000508604	CELA2A	P08217	269 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	HOXB6	P17509	224 aa	Known RBP	4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	PROK1	P58294	105 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	CREM	Q03060	361 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	NOMO1	Q15155	1222 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	ADRM1	Q16186	407 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	SEM1	Q6ZVN7	128 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	PDPR	Q8NCN5	879 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	CYFIP2	Q96F07	1278 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	IFT122	Q9HBG6	1241 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	TOPORS	Q9NS56	1045 aa	Predicted RBP	4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	FANCL	Q9NW38	375 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	FBXO34	Q9NWN3	711 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	CCDC78	A2IDD5	438 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	PRSS23	O95084	383 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	BMP15	O95972	392 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	SRGN	P10124	158 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	GUCY1A2	P33402	732 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	ANO4	Q32M45	955 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	PEG10	Q86TG7	708 aa	Known RBP	4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	TBC1D15	Q8TC07	691 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	SREK1	Q8WXA9	508 aa	Known RBP	4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	DDB2	Q92466	427 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	GSTO2	Q9H4Y5	243 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	LDAH	Q9H6V9	325 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	INTS13	Q9NVM9	706 aa		4.06	□□□□□ -1.76
NUP54-208	ENST00000508604	KAT6A	Q92794	2004 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	PTGER1	P34995	402 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	MAPK10	P53779	464 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	FPGS	Q05932	587 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	SLC10A2	Q12908	348 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	MUM1	Q2TAK8	710 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	TKFC	Q3LXA3	575 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	KIAA0895L	Q68EN5	471 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	FCRLB	Q6BAA4	426 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	VWA1	Q6PCB0	445 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	CLNK	Q7Z7G1	428 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	TOR1AIP2	Q8NFQ8	470 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	TFAP2B	Q92481	460 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	PGBD1	Q96JS3	809 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	RNPC3	Q96LT9	517 aa	Known RBP	4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	QRSL1	Q9H0R6	528 aa	Known RBP	4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	NEU2	Q9Y3R4	380 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	ACTL7A	Q9Y615	435 aa		4.05	□□□□□ -1.76
NUP54-208	ENST00000508604	ZNF804B	A4D1E1	1349 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	CDHR4	A6H8M9	788 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	GOLGA8A	A7E2F4	631 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	ZEB2	O60315	1214 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	GPR32	O75388	356 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	CDC45	O75419	566 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	NOMO3	P69849	1222 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	GRM1	Q13255	1194 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	LLGL1	Q15334	1064 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	CCDC144B	Q3MJ40	725 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	NOMO2	Q5JPE7	1267 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	LCE1A	Q5T7P2	110 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	TSPEAR	Q8WU66	669 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	TMEM125	Q96AQ2	219 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	TTC1	Q99614	292 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	BRIP1	Q9BX63	1249 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	IFT22	Q9H7X7	185 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	FLRT1	Q9NZU1	646 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	HSFX1	Q9UBD0	423 aa		4.04	□□□□□ -1.76
NUP54-208	ENST00000508604	SLC23A1	Q9UHI7	598 aa		4.04	□□□□□ -1.76

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