RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 KRT76Q01546 638 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DMP1Q13316 513 aaPredicted RBP17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MKRN4PQ13434 485 aaPredicted RBP17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PIGWQ7Z7B1 504 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SPIRE2Q8WWL2 714 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KIFAP3Q92845 792 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PI4K2AQ9BTU6 479 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCDC134Q9H6E4 229 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RASGRF2O14827 1237 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 IVDP26440 423 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KRT17Q04695 432 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CST9Q5W186 159 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MFSD5Q6N075 450 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 LRRC34Q8IZ02 419 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SAMD3Q8N6K7 520 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 LPAR1Q92633 364 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KLRG1Q96E93 195 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RMDN3Q96TC7 470 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DDX23Q9BUQ8 820 aaKnown RBP17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ELP3Q9H9T3 547 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CHST7Q9NS84 486 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 WHRNQ9P202 907 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MROH7Q68CQ1 1323 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ASAP2O43150 1006 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ZNF862O60290 1169 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SCTRP47872 440 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GCNT1Q02742 428 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GRM1Q13255 1194 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 VGLL4Q14135 290 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PPP1R7Q15435 360 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SGO2Q562F6 1265 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 C15orf39Q6ZRI6 1047 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TRMT10CQ7L0Y3 403 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MCOLN2Q8IZK6 566 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ZNF516Q92618 1163 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCDC114Q96M63 670 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TACO1Q9BSH4 297 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MOV10L1Q9BXT6 1211 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KIAA1683Q9H0B3 1180 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CDC42EP4Q9H3Q1 356 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KDM4CQ9H3R0 1056 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KLC4Q9NSK0 619 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 INTS9Q9NV88 658 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ANAPC7Q9UJX3 599 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MYPNQ86TC9 1320 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KIAA1217Q5T5P2 1943 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PPP1R12AO14974 1030 aaPredicted RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ITGBL1O95965 494 aaPredicted RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KRT5P13647 590 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MAPK4P31152 587 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CHKAP35790 457 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 HTRA3P83110 453 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SNX1Q13596 522 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CNGA2Q16280 664 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TAS1R3Q7RTX0 852 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 EXOC3L1Q86VI1 746 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCDC25Q86WR0 208 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 POMGNT1Q8WZA1 660 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PRMT1Q99873 361 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ROPN1BQ9BZX4 212 aaPredicted RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ROPN1Q9HAT0 212 aaPredicted RBP17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PDLIM7Q9NR12 457 aa17.16■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TESPA1A2RU30 521 aaPredicted RBP17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GHRP10912 638 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SCP2P22307 547 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MNAT1P51948 309 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CALCOCO2Q13137 446 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCDC38Q502W7 563 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GPD1LQ8N335 351 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCDC197Q8NCU1 140 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ATG4AQ8WYN0 398 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 P3H4Q92791 437 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SENP7Q9BQF6 1050 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 AVENQ9NQS1 362 aaPredicted RBP17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TELO2Q9Y4R8 837 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DOCK5Q9H7D0 1870 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PARP14Q460N5 1801 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RRM1P23921 792 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SUPT20HL1Q3ZLR7 823 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 LLGL2Q6P1M3 1020 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RDM1Q8NG50 284 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DDX27Q96GQ7 796 aaKnown RBP17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CEP170P1Q96L14 293 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PCDHA10Q9Y5I2 948 aa17.15■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCT8L1PA6NM43 557 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ITIH2P19823 946 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ENPEPQ07075 957 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PTK6Q13882 451 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 LONRF1Q17RB8 773 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ARHGEF16Q5VV41 709 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ENOSF1Q7L5Y1 443 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PHLDB2Q86SQ0 1253 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CPA5Q8WXQ8 436 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 FAM213AQ9BRX8 229 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 STMN4Q9H169 189 aaPredicted RBP17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 C17orf75Q9HAS0 396 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 XPNPEP1Q9NQW7 623 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 GABBR1Q9UBS5 961 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TCEAL9Q9UHQ7 104 aa17.14■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ZC3H11AO75152 810 aaKnown RBP eCLIP17.13■□□□□ 0.332e-6■■■■■ 41.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms