RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 TNNI1P19237 187 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 LRPAP1P30533 357 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 CLCNKBP51801 687 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 AP3M2P53677 418 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 STX17P56962 302 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 SOX4Q06945 474 aaPredicted RBP18.51■□□□□ 0.55
HDAC6-235ENST00000495515 ENPEPQ07075 957 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 GRIN2CQ14957 1233 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 UPP1Q16831 310 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 TPD52L1Q16890 204 aaPredicted RBP18.51■□□□□ 0.55
HDAC6-235ENST00000495515 ZC3H3Q8IXZ2 948 aaKnown RBP18.51■□□□□ 0.55
HDAC6-235ENST00000495515 TMC2Q8TDI7 906 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 FAM161BQ96MY7 647 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 GAS2L1Q99501 681 aaPredicted RBP18.51■□□□□ 0.55
HDAC6-235ENST00000495515 CGRRF1Q99675 332 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 PRDM12Q9H4Q4 367 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 GOLGA2P5Q9HBQ8 144 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 DPP3Q9NY33 737 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 TUBGCP4Q9UGJ1 667 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 ADAM28Q9UKQ2 775 aa18.51■□□□□ 0.55
HDAC6-235ENST00000495515 TMEM189-UBE2V1I3L0A0 370 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 TRAPPC3O43617 180 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 GNA14O95837 355 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 PAX3P23760 479 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 ELAVL2Q12926 359 aaKnown RBP18.5■□□□□ 0.55
HDAC6-235ENST00000495515 FILIP1Q7Z7B0 1213 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 DDX53Q86TM3 631 aaKnown RBP18.5■□□□□ 0.55
HDAC6-235ENST00000495515 EFCAB13Q8IY85 973 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 SPPL3Q8TCT6 385 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 PARD3BQ8TEW8 1205 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 GDPD5Q8WTR4 605 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 METTL14Q9HCE5 456 aaKnown RBP18.5■□□□□ 0.55
HDAC6-235ENST00000495515 ALG13Q9NP73 1137 aaKnown RBP18.5■□□□□ 0.55
HDAC6-235ENST00000495515 INTS13Q9NVM9 706 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 NUB1Q9Y5A7 615 aa18.5■□□□□ 0.55
HDAC6-235ENST00000495515 SF3B1O75533 1304 aaKnown RBP eCLIP18.49■□□□□ 0.55
HDAC6-235ENST00000495515 CCDC192P0DO97 292 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 VAMP7P51809 220 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 WNT7BP56706 349 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 PDE12Q6L8Q7 609 aaKnown RBP18.49■□□□□ 0.55
HDAC6-235ENST00000495515 POF1BQ8WVV4 589 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 EEF2KMTQ96G04 330 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 DUSP9Q99956 384 aaKnown RBP18.49■□□□□ 0.55
HDAC6-235ENST00000495515 PAAF1Q9BRP4 392 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 NAT10Q9H0A0 1025 aaKnown RBP18.49■□□□□ 0.55
HDAC6-235ENST00000495515 MARCH5Q9NX47 278 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 LMCD1Q9NZU5 365 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 ITGA11Q9UKX5 1188 aa18.49■□□□□ 0.55
HDAC6-235ENST00000495515 EPOPA6NHQ4 379 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 IKBKBO14920 756 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 GRM6O15303 877 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 STX10O60499 249 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 KIF4AO95239 1232 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 RBP5P82980 135 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 TYRO3Q06418 890 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 BFSP1Q12934 665 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 CCDC40Q4G0X9 1142 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 C9orf57Q5W0N0 161 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 FUT10Q6P4F1 479 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 TMEM173Q86WV6 379 aaPredicted RBP18.48■□□□□ 0.55
HDAC6-235ENST00000495515 RABGGTAQ92696 567 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 SRRTQ9BXP5 876 aaKnown RBP18.48■□□□□ 0.55
HDAC6-235ENST00000495515 MTMR12Q9C0I1 747 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 TLR9Q9NR96 1032 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 MTMR10Q9NXD2 777 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 CACNG4Q9UBN1 327 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 ARMCX3Q9UH62 379 aaPredicted RBP18.48■□□□□ 0.55
HDAC6-235ENST00000495515 CITO14578 2027 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 RALGAPA2Q2PPJ7 1873 aa18.48■□□□□ 0.55
HDAC6-235ENST00000495515 RFXAPO00287 272 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 LPXNO60711 386 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 PNPLA4P41247 253 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 GUCY2FP51841 1108 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 CLDN10P78369 228 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 LMBRD2Q68DH5 695 aaPredicted RBP18.47■□□□□ 0.55
HDAC6-235ENST00000495515 FRMD5Q7Z6J6 570 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 MICAL1Q8TDZ2 1067 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 MRPL38Q96DV4 380 aaKnown RBP18.47■□□□□ 0.55
HDAC6-235ENST00000495515 ZNF560Q96MR9 790 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 NGRNQ9NPE2 291 aaKnown RBP18.47■□□□□ 0.55
HDAC6-235ENST00000495515 SSX2IPQ9Y2D8 614 aa18.47■□□□□ 0.55
HDAC6-235ENST00000495515 ANO9A1A5B4 782 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 ARHGEF37A1IGU5 675 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 LRRIQ3A6PVS8 624 aaPredicted RBP18.46■□□□□ 0.55
HDAC6-235ENST00000495515 PIRO00625 290 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 PHACTR2O75167 634 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 SOD2P04179 222 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 ITGB3P05106 788 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 KRT19P08727 400 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 BIRC3Q13489 604 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 TRPC3Q13507 836 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 USP41Q3LFD5 358 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 KIAA1841Q6NSI8 718 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 TRAPPC11Q7Z392 1133 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 TMC7Q7Z402 723 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 FAM114A1Q8IWE2 563 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 VPS52Q8N1B4 723 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 LRRC52Q8N7C0 313 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 C1orf127Q8N9H9 656 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 OR5B17Q8NGF7 314 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms