RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF425Q6IV72 752 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 SEM1Q6ZVN7 128 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 HASPINQ8TF76 798 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 CASKIN2Q8WXE0 1202 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 STON2Q8WXE9 905 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 AUTS2Q8WXX7 1259 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 FATE1Q969F0 183 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 RNPC3Q96LT9 517 aaKnown RBP5.6□□□□□ -1.51
VPS50-219ENST00000495039 RBM12Q9NTZ6 932 aaKnown RBP5.6□□□□□ -1.51
VPS50-219ENST00000495039 TMEM140Q9NV12 185 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 PLAAQ9Y263 795 aa5.6□□□□□ -1.51
VPS50-219ENST00000495039 MANSC4A6NHS7 340 aaPredicted RBP5.59□□□□□ -1.51
VPS50-219ENST00000495039 YY2O15391 372 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 CELA2AP08217 269 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 SOX10P56693 466 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 CCT2P78371 535 aaKnown RBP5.59□□□□□ -1.51
VPS50-219ENST00000495039 MRPS9P82933 396 aaKnown RBP5.59□□□□□ -1.51
VPS50-219ENST00000495039 EZH2Q15910 746 aaKnown RBP5.59□□□□□ -1.51
VPS50-219ENST00000495039 KAZNQ674X7 775 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 TSPEARQ8WU66 669 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 NUP133Q8WUM0 1156 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 MFSD3Q96ES6 412 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 MARS2Q96GW9 593 aaKnown RBP5.59□□□□□ -1.51
VPS50-219ENST00000495039 GREM2Q9H772 168 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 HSFX1Q9UBD0 423 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 SLC23A1Q9UHI7 598 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 SCOCQ9UIL1 159 aa5.59□□□□□ -1.51
VPS50-219ENST00000495039 AJAP1Q9UKB5 411 aaPredicted RBP5.59□□□□□ -1.51
VPS50-219ENST00000495039 MPPED1O15442 326 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 ULK1O75385 1050 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 MAPK10P53779 464 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 SESN3P58005 492 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 SRSF7Q16629 238 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS50-219ENST00000495039 NBPF8Q3BBV2 869 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 MUM1L1Q5H9M0 696 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 UBE3BQ7Z3V4 1068 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 PEG10Q86TG7 708 aaKnown RBP5.58□□□□□ -1.52
VPS50-219ENST00000495039 FITM2Q8N6M3 262 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 LEO1Q8WVC0 666 aaPredicted RBP5.58□□□□□ -1.52
VPS50-219ENST00000495039 SREK1Q8WXA9 508 aaKnown RBP5.58□□□□□ -1.52
VPS50-219ENST00000495039 DPF1Q92782 380 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 HOXB13Q92826 284 aaPredicted RBP5.58□□□□□ -1.52
VPS50-219ENST00000495039 FANCLQ9NW38 375 aa5.58□□□□□ -1.52
VPS50-219ENST00000495039 SETD1BQ9UPS6 1966 aaKnown RBP5.58□□□□□ -1.52
VPS50-219ENST00000495039 ENDOD1O94919 500 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 PRKCGP05129 697 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 SRGNP10124 158 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 MTHFD2P13995 350 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 FPR1P21462 350 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 GRIA3P42263 894 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 NOMO3P69849 1222 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 NOMO1Q15155 1222 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 MUM1Q2TAK8 710 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 NOMO2Q5JPE7 1267 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 TSTD2Q5T7W7 516 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 VWA1Q6PCB0 445 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 DDB2Q92466 427 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 USP7Q93009 1102 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 ACE2Q9BYF1 805 aaPredicted RBP5.57□□□□□ -1.52
VPS50-219ENST00000495039 KRTAP1-5Q9BYS1 174 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 LDAHQ9H6V9 325 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 ZBTB21Q9ULJ3 1066 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 WNT6Q9Y6F9 365 aa5.57□□□□□ -1.52
VPS50-219ENST00000495039 PROM1O43490 865 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 BPIP17213 487 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 EXOSC10Q01780 885 aaKnown RBP5.56□□□□□ -1.52
VPS50-219ENST00000495039 CCDC144BQ3MJ40 725 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 PDPRQ8NCN5 879 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 CLRN3Q8NCR9 226 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 FBXL20Q96IG2 436 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 MYOCQ99972 504 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 QRSL1Q9H0R6 528 aaKnown RBP5.56□□□□□ -1.52
VPS50-219ENST00000495039 IFT122Q9HBG6 1241 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 ACTL7AQ9Y615 435 aa5.56□□□□□ -1.52
VPS50-219ENST00000495039 CDHR4A6H8M9 788 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 PPP3CAQ08209 521 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 ANO4Q32M45 955 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 DALRD3Q5D0E6 543 aaKnown RBP5.55□□□□□ -1.52
VPS50-219ENST00000495039 FCRLBQ6BAA4 426 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 Q8NA96 180 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 TFAP2BQ92481 460 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 CYFIP2Q96F07 1278 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 ADI1Q9BV57 179 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 DMRT3Q9NQL9 472 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 INTS13Q9NVM9 706 aa5.55□□□□□ -1.52
VPS50-219ENST00000495039 A0A1W2PS29 197 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 GPR32O75388 356 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 ITPKBP27987 946 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 PCSK1P29120 753 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 SLFN5Q08AF3 891 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 DHCR24Q15392 516 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.54□□□□□ -1.52
VPS50-219ENST00000495039 AMIGO2Q86SJ2 522 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 TBC1D15Q8TC07 691 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 TMEM125Q96AQ2 219 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 GSTO2Q9H4Y5 243 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 IFT22Q9H7X7 185 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 FLRT1Q9NZU1 646 aa5.54□□□□□ -1.52
VPS50-219ENST00000495039 ZNF804BA4D1E1 1349 aa5.53□□□□□ -1.52
VPS50-219ENST00000495039 CDC45O75419 566 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms