RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 PPP1R16BQ96T49 567 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 CDCA3Q99618 268 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-210ENST00000493727 PHF7Q9BWX1 381 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-210ENST00000493727 NIFKQ9BYG3 293 aaKnown RBP13.34□□□□□ -0.27
UPF3A-210ENST00000493727 TRIM9Q9C026 710 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 ADAMTS10Q9H324 1103 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 ZHX3Q9H4I2 956 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 TLE6Q9H808 572 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 TYW1Q9NV66 732 aaKnown RBP13.34□□□□□ -0.27
UPF3A-210ENST00000493727 KCND2Q9NZV8 630 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 PUF60Q9UHX1 559 aaKnown RBP13.34□□□□□ -0.27
UPF3A-210ENST00000493727 LZTS1Q9Y250 596 aa13.34□□□□□ -0.27
UPF3A-210ENST00000493727 CARNS1A5YM72 827 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 MYMKA6NI61 221 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 FAM13AO94988 1023 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 STBD1O95210 358 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 IDEP14735 1019 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 ATF7P17544 494 aaPredicted RBP13.33□□□□□ -0.28
UPF3A-210ENST00000493727 CYP11B2P19099 503 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 PPM1AP35813 382 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 DNM2P50570 870 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 VCPP55072 806 aaKnown RBP13.33□□□□□ -0.28
UPF3A-210ENST00000493727 GDF10P55107 478 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 CLDN10P78369 228 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 FAM102BQ5T8I3 360 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 RINT1Q6NUQ1 792 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 MAEAQ7L5Y9 396 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 LRRC43Q8N309 656 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 LRRC71Q8N4P6 559 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 COLGALT1Q8NBJ5 622 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 SLC7A3Q8WY07 619 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 ERCC4Q92889 916 aaPredicted RBP13.33□□□□□ -0.28
UPF3A-210ENST00000493727 C7orf25Q9BPX7 421 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 JPH2Q9BR39 696 aaPredicted RBP13.33□□□□□ -0.28
UPF3A-210ENST00000493727 EXOC1Q9NV70 894 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 RMND1Q9NWS8 449 aa13.33□□□□□ -0.28
UPF3A-210ENST00000493727 NPHP3-ACAD11A0A0J9YXS1 232 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 EOMESO95936 686 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 DARSP14868 501 aaKnown RBP13.32□□□□□ -0.28
UPF3A-210ENST00000493727 GPC3P51654 580 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 RBM10P98175 930 aaKnown RBP13.32□□□□□ -0.28
UPF3A-210ENST00000493727 PLCB3Q01970 1234 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 DPYDQ12882 1025 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 KCNC3Q14003 757 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 EMC2Q15006 297 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 TARBP2Q15633 366 aaKnown RBP13.32□□□□□ -0.28
UPF3A-210ENST00000493727 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.32□□□□□ -0.28
UPF3A-210ENST00000493727 SASS6Q6UVJ0 657 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 C1orf186Q6ZWK4 172 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 RBM23Q86U06 439 aaKnown RBP13.32□□□□□ -0.28
UPF3A-210ENST00000493727 ECHDC2Q86YB7 292 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 CCDC65Q8IXS2 484 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 MCPH1Q8NEM0 835 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 ZNF558Q96NG5 402 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 TIPINQ9BVW5 301 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 INO80BQ9C086 356 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-210ENST00000493727 GRIP2Q9C0E4 1043 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 CWH43Q9H720 699 aa13.32□□□□□ -0.28
UPF3A-210ENST00000493727 SYCE3A1L190 88 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 BIN1O00499 593 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 GAS2O43903 313 aaKnown RBP13.31□□□□□ -0.28
UPF3A-210ENST00000493727 RPN1P04843 607 aaKnown RBP13.31□□□□□ -0.28
UPF3A-210ENST00000493727 FGFR1P11362 822 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 GUCY2CP25092 1073 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 CENPCQ03188 943 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 KRT17Q04695 432 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 BMS1Q14692 1282 aaKnown RBP13.31□□□□□ -0.28
UPF3A-210ENST00000493727 DUSP6Q16828 381 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 ZSCAN23Q3MJ62 389 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 ARSHQ5FYA8 562 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 UNC13DQ70J99 1090 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 DRC1Q96MC2 740 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 REEP2Q9BRK0 252 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 ANP32EQ9BTT0 268 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 MRPL9Q9BYD2 267 aaKnown RBP13.31□□□□□ -0.28
UPF3A-210ENST00000493727 GCOM2Q9BZD3 368 aaPredicted RBP13.31□□□□□ -0.28
UPF3A-210ENST00000493727 NGRNQ9NPE2 291 aaKnown RBP13.31□□□□□ -0.28
UPF3A-210ENST00000493727 CHST12Q9NRB3 414 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 PANK4Q9NVE7 773 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 ODF2LQ9ULJ1 636 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 PCDHA5Q9Y5H7 936 aa13.31□□□□□ -0.28
UPF3A-210ENST00000493727 A0A0U1RQF3 1178 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 FSCN2O14926 492 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 HIP1RO75146 1068 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 SFPQP23246 707 aaKnown RBP eCLIP13.3□□□□□ -0.28
UPF3A-210ENST00000493727 ATP1A2P50993 1020 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 GIT2Q14161 759 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 PTPN21Q16825 1174 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 KCNT2Q6UVM3 1135 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 TMEM184AQ6ZMB5 413 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 ZNF410Q86VK4 478 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 RPGRIP1Q96KN7 1286 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 CASD1Q96PB1 797 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 GSDMAQ96QA5 445 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 POLR3FQ9H1D9 316 aaPredicted RBP13.3□□□□□ -0.28
UPF3A-210ENST00000493727 PARVGQ9HBI0 331 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 FAM86C1Q9NVL1 165 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 SPG21Q9NZD8 308 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 COL4A3BPQ9Y5P4 624 aa13.3□□□□□ -0.28
UPF3A-210ENST00000493727 DNAH14Q0VDD8 3507 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms