RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RASSF1Q9NS23 344 aa5.45□□□□□ -1.54
VPS13A-212ENST00000493341 LANCL2Q9NS86 450 aa5.45□□□□□ -1.54
VPS13A-212ENST00000493341 TMEM140Q9NV12 185 aa5.45□□□□□ -1.54
VPS13A-212ENST00000493341 C19orf73Q9NVV2 129 aa5.45□□□□□ -1.54
VPS13A-212ENST00000493341 PLA2G2DQ9UNK4 145 aa5.45□□□□□ -1.54
VPS13A-212ENST00000493341 TRIM43BA6NCK2 446 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 TISP43B9A030 160 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 B9A039 149 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 EXOC5O00471 708 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 FIBPO43427 364 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 CD1AP06126 327 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 FPR1P21462 350 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 PCSK1P29120 753 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 KRT9P35527 623 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 PIK3CGP48736 1102 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 SESN2P58004 480 aaPredicted RBP5.44□□□□□ -1.54
VPS13A-212ENST00000493341 ERVFRD-1P60508 538 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 CTBP1Q13363 440 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 PLEKHN1Q494U1 663 aaPredicted RBP5.44□□□□□ -1.54
VPS13A-212ENST00000493341 SLC44A4Q53GD3 710 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 CNKSR3Q6P9H4 555 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 CATSPERGQ6ZRH7 1159 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 HEATR4Q86WZ0 1026 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 COLGALT2Q8IYK4 626 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 PIK3C3Q8NEB9 887 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 REPS2Q8NFH8 660 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 SLC30A5Q8TAD4 765 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 STYXQ8WUJ0 223 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 TRIM43Q96BQ3 446 aaPredicted RBP5.44□□□□□ -1.54
VPS13A-212ENST00000493341 DCAF5Q96JK2 942 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 SYT3Q9BQG1 590 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 STK31Q9BXU1 1019 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 TRPS1Q9UHF7 1281 aa5.44□□□□□ -1.54
VPS13A-212ENST00000493341 PIP5K1BO14986 540 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 CAPN3P20807 821 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ELF1P32519 619 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 PTPN7P35236 360 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 MAPKAPK2P49137 400 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 NOMO3P69849 1222 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ATP8B2P98198 1209 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 SETQ01105 290 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 RAB30Q15771 203 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ARHGAP15Q53QZ3 475 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 C19orf54Q5BKX5 351 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ANKRD45Q5TZF3 282 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 SULT6B1Q6IMI4 303 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 MZT2BQ6NZ67 158 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 MICU3Q86XE3 530 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 TMTC1Q8IUR5 882 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 BCL6BQ8N143 479 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 NGDNQ8NEJ9 315 aaKnown RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 HDAC2Q92769 488 aaKnown RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 UNC45AQ9H3U1 944 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 TM7SF3Q9NS93 570 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 SPATA6Q9NWH7 488 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 CLIC5Q9NZA1 410 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 POLG2Q9UHN1 485 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 MED16Q9Y2X0 877 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 A6NCN8 305 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 DAPK3O43293 454 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 XBP1P17861 261 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 GDNFP39905 211 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 CARSP49589 748 aaKnown RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 STAT5BP51692 787 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 PTK2BQ14289 1009 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 LIN54Q6MZP7 749 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 SLC23A3Q6PIS1 610 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 TBC1D1Q86TI0 1168 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 STK32CQ86UX6 486 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 MOGAT3Q86VF5 341 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 GLIS1Q8NBF1 620 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 CCDC150Q8NCX0 1101 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 FAM71BQ8TC56 605 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 RILPL2Q969X0 211 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ZSWIM3Q96MP5 696 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 PYM1Q9BRP8 204 aaKnown RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 EIF2AQ9BY44 585 aaKnown RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ZNF518BQ9C0D4 1074 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 SMURF2Q9HAU4 748 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ALG13Q9NP73 1137 aaKnown RBP5.43□□□□□ -1.54
VPS13A-212ENST00000493341 RIC8AQ9NPQ8 531 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 IGSF9Q9P2J2 1179 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 AFG3L2Q9Y4W6 797 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ACTL7AQ9Y615 435 aa5.43□□□□□ -1.54
VPS13A-212ENST00000493341 ITIH6Q6UXX5 1313 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 A0A0G2JNJ9 132 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 PYCARD-AS1I3L0S3 204 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 CCER2I3L3R5 266 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 MAFO75444 373 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-212ENST00000493341 ITGA10O75578 1167 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 MATN4O95460 622 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 ABHD16AO95870 558 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 CTXN1P60606 82 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 ADAM9Q13443 819 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 MTM1Q13496 603 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 RAB32Q13637 225 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 HABP2Q14520 560 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-212ENST00000493341 FBXO47Q5MNV8 452 aa5.42□□□□□ -1.54
VPS13A-212ENST00000493341 EMC10Q5UCC4 262 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms