RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	TNNI3K	Q59H18	835 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	CDCP2	Q5VXM1	449 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	FBXW10	Q5XX13	1052 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	OVOS1	Q6IE37	1185 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	MRM1	Q6IN84	353 aa	Known RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	LDHAL6A	Q6ZMR3	332 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	TOGARAM2	Q6ZUX3	1019 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	UBE3D	Q7Z6J8	389 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	MAP4K3	Q8IVH8	894 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	FBXO16	Q8IX29	292 aa	Predicted RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	FMR1NB	Q8N0W7	255 aa	Predicted RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	DTWD1	Q8N5C7	304 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	TAB3	Q8N5C8	712 aa	Predicted RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	C19orf47	Q8N9M1	422 aa	Known RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	WDR66	Q8TBY9	1149 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	PI4K2B	Q8TCG2	481 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	TMEM40	Q8WWA1	233 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	FGF14	Q92915	247 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	DEPDC7	Q96QD5	511 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	USP26	Q9BXU7	913 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	PUS3	Q9BZE2	481 aa	Known RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	DUSP15	Q9H1R2	295 aa	Predicted RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	GSX1	Q9H4S2	264 aa	Predicted RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	CNNM2	Q9H8M5	875 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	LMAN1L	Q9HAT1	526 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	ENTPD7	Q9NQZ7	604 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	ST7	Q9NRC1	585 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	DISC1	Q9NRI5	854 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	CNNM1	Q9NRU3	951 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	ACTR10	Q9NZ32	417 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	CRIM1	Q9NZV1	1036 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	HDAC6	Q9UBN7	1215 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	NDRG2	Q9UN36	371 aa	Known RBP	4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	DOCK6	Q96HP0	2047 aa		4.82	□□□□□ -1.64
UBR4-215	ENST00000492606	BIRC6	Q9NR09	4857 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	MYO16	Q9Y6X6	1858 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	KMT2C	Q8NEZ4	4911 aa	Known RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	MEGF11	A6BM72	1044 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	C2orf71	A6NGG8	1288 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606		B2RBV5	119 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	TNFRSF10C	O14798	259 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	EIF4EBP3	O60516	100 aa	Predicted RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	ATP9A	O75110	1047 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	SIX3	O95343	332 aa	Predicted RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	GJB6	O95452	261 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	LAMP2	P13473	410 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	NME1	P15531	152 aa	Known RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	ALDH7A1	P49419	539 aa	Known RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	CPT1A	P50416	773 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	WTAP	Q15007	396 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	RAB3GAP1	Q15042	981 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	DUSP28	Q4G0W2	176 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	EXOSC6	Q5RKV6	272 aa	Known RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	HDX	Q7Z353	690 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	TTC6	Q86TZ1	520 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	SPACA3	Q8IXA5	215 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	SLC22A17	Q8WUG5	538 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	KAT2B	Q92831	832 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	MOCOS	Q96EN8	888 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	SRPK1	Q96SB4	655 aa	Known RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	WNT10A	Q9GZT5	417 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	FBRS	Q9HAH7	460 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	FBXO28	Q9NVF7	368 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	PI4KB	Q9UBF8	816 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	TJP2	Q9UDY2	1190 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	GTF2IRD1	Q9UHL9	959 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	MBD1	Q9UIS9	605 aa	Predicted RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	DENND2A	Q9ULE3	1009 aa		4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	TMA7	Q9Y2S6	64 aa	Known RBP	4.81	□□□□□ -1.64
UBR4-215	ENST00000492606	CACNA1F	O60840	1977 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	ZNF469	Q96JG9	3925 aa	Predicted RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	PAPSS2	O95340	614 aa	Predicted RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	CD59	P13987	128 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	PRF1	P14222	555 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	GUCY2C	P25092	1073 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	GUCY1A2	P33402	732 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	ZEB1	P37275	1124 aa	Predicted RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	RBMX	P38159	391 aa	Known RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	THPO	P40225	353 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	SEMG2	Q02383	582 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	CCDC173	Q0VFZ6	552 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	IFIT5	Q13325	482 aa	Known RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	RASGRF1	Q13972	1273 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	CAVIN4	Q5BKX8	364 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	ZBTB37	Q5TC79	503 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	PARM1	Q6UWI2	310 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	ZNF852	Q6ZMS4	543 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	UNC5A	Q6ZN44	842 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	MRPL43	Q8N983	215 aa	Known RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	ZSCAN1	Q8NBB4	408 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	KLHL6	Q8WZ60	621 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	MRPS27	Q92552	414 aa	Known RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	ZNF775	Q96BV0	537 aa	Predicted RBP	4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	MRFAP1L1	Q96HT8	127 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	HIC2	Q96JB3	615 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	FANCD2OS	Q96PS1	177 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	DNAJC7	Q99615	494 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	TM9SF2	Q99805	663 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	TRIM55	Q9BYV6	548 aa		4.8	□□□□□ -1.64
UBR4-215	ENST00000492606	PANK3	Q9H999	370 aa		4.8	□□□□□ -1.64

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