RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 LMCD1Q9NZU5 365 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TMEM63CQ9P1W3 806 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 CACNG4Q9UBN1 327 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TUBGCP4Q9UGJ1 667 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 ADAM28Q9UKQ2 775 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 MYO9BQ13459 2157 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TRIM49BA6NDI0 452 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 TMEM189-UBE2V1I3L0A0 370 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 LPXNO60711 386 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 KIF4AO95239 1232 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 TNNC2P02585 160 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 DLATP10515 647 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 EPB41P11171 864 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 KRT13P13646 458 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 TNNI1P19237 187 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 IGFBP4P22692 258 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 LRPAP1P30533 357 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 CASP4P49662 377 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 PMS1P54277 932 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 WNT7BP56706 349 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 ELAVL2Q12926 359 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 DUOXA2Q1HG44 320 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 PDE12Q6L8Q7 609 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 DDX53Q86TM3 631 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 WDR49Q8IV35 697 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 EFCAB13Q8IY85 973 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 FAM186BQ8IYM0 893 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 HASPINQ8TF76 798 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 BCL7CQ8WUZ0 217 aaPredicted RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 MYLIPQ8WY64 445 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 CCDC127Q96BQ5 260 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 MRPL38Q96DV4 380 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 GUCD1Q96NT3 240 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 CGRRF1Q99675 332 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 MKNK1Q9BUB5 465 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 TLR9Q9NR96 1032 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 RWDD2AQ9UIY3 292 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 R3HCC1Q9Y3T6 440 aaKnown RBP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 NUB1Q9Y5A7 615 aa11.77□□□□□ -0.53
VPS13D-210ENST00000489961 SF3B1O75533 1304 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS13D-210ENST00000489961 SLC16A3O15427 465 aaKnown RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 TRAPPC3O43617 180 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 AKAP3O75969 853 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 LETM1O95202 739 aaPredicted RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 FGFR1OPO95684 399 aaKnown RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 FOSL2P15408 326 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 POU3F3P20264 500 aaPredicted RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 GUCY2FP51841 1108 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 AP3M2P53677 418 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 STX17P56962 302 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 DPCR1Q3MIW9 517 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 CT47A1Q5JQC4 288 aaPredicted RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 TTI2Q6NXR4 508 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 FUT10Q6P4F1 479 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 INTS8Q75QN2 995 aaKnown RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 TMC7Q7Z402 723 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 ZC3H3Q8IXZ2 948 aaKnown RBP11.76□□□□□ -0.53
VPS13D-210ENST00000489961 VPS52Q8N1B4 723 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 CSGALNACT2Q8N6G5 542 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 TMC2Q8TDI7 906 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 MICAL1Q8TDZ2 1067 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 PARD3BQ8TEW8 1205 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 CEP63Q96MT8 703 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 HERC2P3Q9BVR0 1158 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 MTMR12Q9C0I1 747 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 ENTPD7Q9NQZ7 604 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 INTS13Q9NVM9 706 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 ANO10Q9NW15 660 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 ITGA11Q9UKX5 1188 aa11.76□□□□□ -0.53
VPS13D-210ENST00000489961 LAMA2P24043 3122 aaKnown RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 F8W810 466 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 CSPG5O95196 566 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 SOD2P04179 222 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 ITGB3P05106 788 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 PAX3P23760 479 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 DNAJB1P25685 340 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 ERCC5P28715 1186 aaPredicted RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 CA8P35219 290 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 VAMP7P51809 220 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 ENPEPQ07075 957 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 BFSP1Q12934 665 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 ADGRE1Q14246 886 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 SMC1AQ14683 1233 aaKnown RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 STX1AQ16623 288 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 TPD52L1Q16890 204 aaPredicted RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 TIGD5Q53EQ6 642 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 C9orf57Q5W0N0 161 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 LMBRD2Q68DH5 695 aaPredicted RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 KIAA1841Q6NSI8 718 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 FILIP1Q7Z7B0 1213 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 PPP2R3CQ969Q6 453 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 EEF2KMTQ96G04 330 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 ZNF560Q96MR9 790 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 DUSP9Q99956 384 aaKnown RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 TCF25Q9BQ70 676 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 GPR62Q9BZJ7 368 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 METTL14Q9HCE5 456 aaKnown RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 NGRNQ9NPE2 291 aaKnown RBP11.75□□□□□ -0.53
VPS13D-210ENST00000489961 SSX2IPQ9Y2D8 614 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 MTCH2Q9Y6C9 303 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms