RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TUBGCP4Q9UGJ1 667 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 BACE2Q9Y5Z0 518 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 ANK1P16157 1881 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 PIGRP01833 764 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 CLTAP09496 248 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 HNRNPA1P09651 372 aaKnown RBP eCLIP25.09■■□□□ 1.61
COL9A3-213ENST00000489045 TNFSF9P41273 254 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 TDGQ13569 410 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 IER5LQ5T953 404 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 GET4Q7L5D6 327 aaPredicted RBP25.09■■□□□ 1.61
COL9A3-213ENST00000489045 SLC7A14Q8TBB6 771 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 USP28Q96RU2 1077 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 STK17AQ9UEE5 414 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 NUB1Q9Y5A7 615 aa25.09■■□□□ 1.61
COL9A3-213ENST00000489045 STX6O43752 255 aa25.08■■□□□ 1.61
COL9A3-213ENST00000489045 NMT1P30419 496 aaKnown RBP25.08■■□□□ 1.61
COL9A3-213ENST00000489045 HOXA9P31269 272 aa25.08■■□□□ 1.61
COL9A3-213ENST00000489045 SPAG1Q07617 926 aa25.08■■□□□ 1.61
COL9A3-213ENST00000489045 VARS2Q5ST30 1063 aaKnown RBP25.08■■□□□ 1.61
COL9A3-213ENST00000489045 AXDND1Q5T1B0 1012 aaPredicted RBP25.08■■□□□ 1.61
COL9A3-213ENST00000489045 PLEKHA5Q9HAU0 1116 aa25.08■■□□□ 1.61
COL9A3-213ENST00000489045 IGSF9Q9P2J2 1179 aa25.08■■□□□ 1.61
COL9A3-213ENST00000489045 EPS15L1Q9UBC2 864 aa25.08■■□□□ 1.61
COL9A3-213ENST00000489045 TTC26A0AVF1 554 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 SYN3O14994 580 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 CCL16O15467 120 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 FAM189A1O60320 539 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 TXLNAP40222 546 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 NHLH1Q02575 133 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 PPP2R3AQ06190 1150 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 ZBTB41Q5SVQ8 909 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 SLC39A4Q6P5W5 647 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 GRASPQ7Z6J2 395 aaPredicted RBP25.07■■□□□ 1.6
COL9A3-213ENST00000489045 MAP4K3Q8IVH8 894 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 TMEM130Q8N3G9 435 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 KRI1Q8N9T8 703 aaKnown RBP25.07■■□□□ 1.6
COL9A3-213ENST00000489045 PRSS33Q8NF86 280 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 KIF12Q96FN5 646 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 ZSCAN16Q9H4T2 348 aaPredicted RBP25.07■■□□□ 1.6
COL9A3-213ENST00000489045 DUSP12Q9UNI6 340 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 NOTCH4Q99466 2003 aa25.07■■□□□ 1.6
COL9A3-213ENST00000489045 OGTO15294 1046 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 AVPR2P30518 371 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 MCM4P33991 863 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 NTHL1P78549 312 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 GTF2BQ00403 316 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 KYAT1Q16773 422 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 RRAGBQ5VZM2 374 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 DYMQ7RTS9 669 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 RSAD2Q8WXG1 361 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 SUSD3Q96L08 255 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP25.06■■□□□ 1.66e-8■■■■■ 41.8
COL9A3-213ENST00000489045 POLIQ9UNA4 740 aa25.06■■□□□ 1.6
COL9A3-213ENST00000489045 A0A0B4J269 797 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 XYLBO75191 536 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 FSHRP23945 695 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 HOXD11P31277 338 aaPredicted RBP25.05■■□□□ 1.6
COL9A3-213ENST00000489045 ABCD1P33897 745 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 ROR1Q01973 937 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 SLC39A14Q15043 492 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 ENOX2Q16206 610 aaKnown RBP25.05■■□□□ 1.6
COL9A3-213ENST00000489045 UVSSAQ2YD98 709 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 ZC2HC1CQ53FD0 456 aaPredicted RBP25.05■■□□□ 1.6
COL9A3-213ENST00000489045 SLC8B1Q6J4K2 584 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 SFR1Q86XK3 245 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 MSTO1Q9BUK6 570 aa25.05■■□□□ 1.6
COL9A3-213ENST00000489045 MORC2Q9Y6X9 1032 aaPredicted RBP25.05■■□□□ 1.6
COL9A3-213ENST00000489045 LACTBL1A8MY62 500 aa25.04■■□□□ 1.6
COL9A3-213ENST00000489045 LAMP2P13473 410 aa25.04■■□□□ 1.6
COL9A3-213ENST00000489045 ZBTB6Q15916 424 aa25.04■■□□□ 1.6
COL9A3-213ENST00000489045 DDX12PQ92771 950 aa25.04■■□□□ 1.6
COL9A3-213ENST00000489045 SNX21Q969T3 373 aa25.04■■□□□ 1.6
COL9A3-213ENST00000489045 ST6GALNAC4Q9H4F1 302 aa25.04■■□□□ 1.6
COL9A3-213ENST00000489045 RPF1Q9H9Y2 349 aaKnown RBP25.04■■□□□ 1.6
COL9A3-213ENST00000489045 UBQLN1Q9UMX0 589 aaKnown RBP25.04■■□□□ 1.6
COL9A3-213ENST00000489045 PIEZO1Q92508 2521 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 WDR27A2RRH5 827 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 MYMKA6NI61 221 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 ANKRD63C9JTQ0 380 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 H7C4K7 107 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 NARSO43776 548 aaKnown RBP25.03■■□□□ 1.6
COL9A3-213ENST00000489045 TBC1D4O60343 1298 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 POU2F2P09086 479 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 CYP3A5P20815 502 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 LRPAP1P30533 357 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 ARPP19P56211 112 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 MRPL58Q14197 206 aaKnown RBP25.03■■□□□ 1.6
COL9A3-213ENST00000489045 SV2BQ7L1I2 683 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 ZNF461Q8TAF7 563 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 PRRX2Q99811 253 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 FBXL5Q9UKA1 691 aa25.03■■□□□ 1.6
COL9A3-213ENST00000489045 CPSF3Q9UKF6 684 aaKnown RBP25.03■■□□□ 1.6
COL9A3-213ENST00000489045 TISP43B9A030 160 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 NASPP49321 788 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-213ENST00000489045 GUCY2FP51841 1108 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 CTXN3Q4LDR2 81 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 CCDC73Q6ZRK6 1079 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 RTL10Q7L3V2 364 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 MFSD1Q9H3U5 465 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 HCFC1R1Q9NWW0 138 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms