RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 NAGPAQ9UK23 515 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 MBLAC1A4D2B0 266 aaPredicted RBP13.08□□□□□ -0.31
HDAC6-230ENST00000488543 RRN3P2A6NIE6 340 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 ASAP2O43150 1006 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 C4BPAP04003 597 aaKnown RBP13.08□□□□□ -0.31
HDAC6-230ENST00000488543 CYP2C9P11712 490 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 HARSP12081 509 aaKnown RBP13.08□□□□□ -0.31
HDAC6-230ENST00000488543 PROZP22891 400 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 SLC7A5Q01650 507 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 MBTD1Q05BQ5 628 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 TFDP1Q14186 410 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 NAB2Q15742 525 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 MAPK6Q16659 721 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 LMBRD2Q68DH5 695 aaPredicted RBP13.08□□□□□ -0.31
HDAC6-230ENST00000488543 LHX8Q68G74 356 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 USP37Q86T82 979 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 KLHDC9Q8NEP7 349 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 NLRP7Q8WX94 980 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 VTI1AQ96AJ9 217 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 MTG1Q9BT17 334 aaPredicted RBP13.08□□□□□ -0.31
HDAC6-230ENST00000488543 RAB20Q9NX57 234 aa13.08□□□□□ -0.31
HDAC6-230ENST00000488543 RBAKQ9NYW8 714 aaPredicted RBP13.08□□□□□ -0.31
HDAC6-230ENST00000488543 GRIN2DO15399 1336 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 ATP8B3O60423 1300 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 TRIM66O15016 1216 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 TOM1L1O75674 476 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 LDHAP00338 332 aaKnown RBP13.08□□□□□ -0.32
HDAC6-230ENST00000488543 GPS2Q13227 327 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 PAPD7Q5XG87 772 aaKnown RBP13.08□□□□□ -0.32
HDAC6-230ENST00000488543 ZBTB33Q86T24 672 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 EXOC4Q96A65 974 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 ELMO3Q96BJ8 720 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 NFKBIZQ9BYH8 718 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 FAM204AQ9H8W3 233 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 PTPRHQ9HD43 1115 aa13.08□□□□□ -0.32
HDAC6-230ENST00000488543 ACKR2O00590 384 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TNFSF9P41273 254 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 MCL1Q07820 350 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TUBB2AQ13885 445 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 ZACNQ401N2 412 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 FAM47CQ5HY64 1035 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 C10orf76Q5T2E6 689 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TDRD10Q5VZ19 366 aaKnown RBP13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TSHZ1Q6ZSZ6 1077 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 DNAAF5Q86Y56 855 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 BRSK2Q8IWQ3 736 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 SLAIN1Q8ND83 568 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 SCLT1Q96NL6 688 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 CGRRF1Q99675 332 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TCHPQ9BT92 498 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TUBB2BQ9BVA1 445 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 KATNAL1Q9BW62 490 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 HMX1Q9NP08 348 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-230ENST00000488543 FAM170AA1A519 330 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 C17orf102A2RUQ5 167 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 CLDN3O15551 220 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 VNN1O95497 513 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 POU5F1BQ06416 359 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 PRPF4BQ13523 1007 aaKnown RBP13.07□□□□□ -0.32
HDAC6-230ENST00000488543 ARHGEF6Q15052 776 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 EEF1DP3Q658K8 133 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 GDF6Q6KF10 455 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-230ENST00000488543 ALKBH5Q6P6C2 394 aaKnown RBP13.07□□□□□ -0.32
HDAC6-230ENST00000488543 FMNL3Q8IVF7 1028 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 SHC3Q92529 594 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 TATDN2Q93075 761 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 NT5C1BQ96P26 610 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 RABEP2Q9H5N1 569 aa13.07□□□□□ -0.32
HDAC6-230ENST00000488543 LUC7LQ9NQ29 371 aaKnown RBP13.07□□□□□ -0.32
HDAC6-230ENST00000488543 BTNL10A8MVZ5 291 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 BUB1O43683 1085 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 RNF40O75150 1001 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 GPR32O75388 356 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 TACC1O75410 805 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 SYF2O95926 243 aaKnown RBP13.06□□□□□ -0.32
HDAC6-230ENST00000488543 NKX3-2P78367 333 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 MTFR1Q15390 333 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 AMHR2Q16671 573 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 FAM71AQ8IYT1 594 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 RNF10Q8N5U6 811 aaKnown RBP13.06□□□□□ -0.32
HDAC6-230ENST00000488543 TRIM58Q8NG06 486 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 SLC20A1Q8WUM9 679 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 WNT8BQ93098 351 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 CPB2Q96IY4 423 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 FNBP1Q96RU3 617 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 OSMRQ99650 979 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 PI4K2AQ9BTU6 479 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 ADAMTS10Q9H324 1103 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 HPCAL4Q9UM19 191 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 ANO9A1A5B4 782 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 OGTO15294 1046 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 HLA-DRAP01903 254 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 FAM187BQ17R55 369 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 WDR93Q6P2C0 686 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 MPZL3Q6UWV2 235 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 VPS36Q86VN1 386 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 GLYCTKQ8IVS8 523 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 PPM1KQ8N3J5 372 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 OR5B17Q8NGF7 314 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 U2AF1L4Q8WU68 220 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms